Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00268
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 113 1e-25
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 113 1e-25
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 94 5e-20
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 76 2e-14
05_05_0377 - 24498664-24500215,24500306-24500643 30 0.93
08_02_1238 + 25486263-25487574,25488210-25489117 28 3.7
07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-17... 27 6.5
05_03_0353 - 12856385-12857705,12858007-12858959 27 6.5
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 27 6.5
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637... 27 6.5
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 27 8.7
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 27 8.7
03_05_0796 + 27787401-27788831 27 8.7
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 27 8.7
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 113 bits (271), Expect = 1e-25
Identities = 55/74 (74%), Positives = 61/74 (82%)
Frame = +2
Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 434 VTNAAARLRSQENE 475
VTN ARLRSQE+E
Sbjct: 120 VTNKLARLRSQEDE 133
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/60 (56%), Positives = 43/60 (71%)
Frame = +3
Query: 87 PVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGPTRR 266
P+ I KR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG ++
Sbjct: 4 PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 113 bits (271), Expect = 1e-25
Identities = 55/74 (74%), Positives = 61/74 (82%)
Frame = +2
Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 127 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 186
Query: 434 VTNAAARLRSQENE 475
VTN ARLRSQE+E
Sbjct: 187 VTNKLARLRSQEDE 200
Score = 54.4 bits (125), Expect = 5e-08
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +3
Query: 171 NWRKPRGIDNRVRRRFKGQYLMPNIGYGPTRR 266
+WR+P+GID+RVRR+FKG LMPNIGYG ++
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 130
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 94.3 bits (224), Expect = 5e-20
Identities = 44/62 (70%), Positives = 51/62 (82%)
Frame = +2
Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 434 VT 439
++
Sbjct: 120 IS 121
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/60 (56%), Positives = 43/60 (71%)
Frame = +3
Query: 87 PVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGPTRR 266
P+ I KR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG ++
Sbjct: 4 PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/60 (56%), Positives = 43/60 (71%)
Frame = +3
Query: 87 PVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGPTRR 266
P+ I KR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG ++
Sbjct: 326 PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 385
Score = 53.6 bits (123), Expect = 9e-08
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 349
S+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 382 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 30.3 bits (65), Expect = 0.93
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = -3
Query: 305 LGPYGIHLGAYDGSSCWTVTDVGHQVL--TLESPADSVVNTSRFTPIPLKFVIAIRLMPD 132
L P+G L Y + T GH VL L SPA TP+P L +
Sbjct: 472 LAPFGASLVEYTSYADTATTIPGHYVLFWELRSPAGG-------TPVPASVFEDCCLAVE 524
Query: 131 KSLRPLXXDCRPVNRSYSP 75
+ L + CR +RS P
Sbjct: 525 EGLNSVYRQCRAADRSIGP 543
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -1
Query: 415 GSFHDQLPLL----RRDTVSDLCAVLPVLHHQ 332
G+ H+Q P L RRD V+D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>07_01_0025 -
172742-173260,174559-174621,174701-174763,
174852-174950,175792-175818,175946-176251
Length = 358
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 3 FFFPSRAAVSPRGSLSRF 56
F+FPS +SPR SLSRF
Sbjct: 36 FYFPSLIPLSPRISLSRF 53
>05_03_0353 - 12856385-12857705,12858007-12858959
Length = 757
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +3
Query: 33 PRGSLS--RFLKKHTRWTIRPVYRPTIXXKRTKRFIRH---QSDRYDKLKRNWR 179
P SLS RFL+ H+R IRP P RF+ SD ++ + WR
Sbjct: 27 PGSSLSSKRFLRSHSRSAIRPWRNPCAARPGGPRFLGQDDADSDADEEDEEEWR 80
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 3 FFFPSRAAVSPRGSLSRF 56
F+FPS +SPR SLSRF
Sbjct: 36 FYFPSLIPLSPRISLSRF 53
>03_02_0203 +
6370729-6370850,6371213-6371391,6371516-6371625,
6372721-6373575
Length = 421
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 367 RSRCLFEEAEADRGKSPAAQHQSDECGRSPPVP 465
RS ++A+RG SPAA H D SP P
Sbjct: 40 RSSTSRRHSDANRGNSPAAPHSLDIYISSPAAP 72
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 298 GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEAD-RGKSPAAQHQSDE 441
GP S G LD K V RRD +R L +A + AA SDE
Sbjct: 35 GPGSFADEHGELDQEKFAVSRRDAARRLIAAVDATLLARRAAAGEGSDE 83
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 466 LGPEASGRIRHSDAELLGSFHDQL 395
L PE S R +S A+LL FH QL
Sbjct: 30 LNPETSARAANSFAKLLARFHVQL 53
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 388 EAEADRGKSPAAQHQSDECGR 450
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +2
Query: 248 LRSNKKTRHMLPNGFRKVL---VHNVKEL---EILMMQNRKYCAEIAH 373
++ ++K+R + NGFRKV HN L ++L+ N KY A H
Sbjct: 274 VQESEKSRRVGNNGFRKVCFWQFHNFHMLLGSDLLIFSNEKYMAVSLH 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,170,342
Number of Sequences: 37544
Number of extensions: 261486
Number of successful extensions: 879
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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