Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00268
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   7e-28
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.059
SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)                  30   0.95 
SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)                  28   3.8  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   3.8  
SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)                 28   5.1  
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)                   27   6.7  
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  
SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  120 bits (289), Expect = 7e-28
 Identities = 56/74 (75%), Positives = 66/74 (89%)
 Frame = +2

Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
           SNKKTR ++P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+
Sbjct: 60  SNKKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIK 119

Query: 434 VTNAAARLRSQENE 475
           VTN+ ARLRS+ENE
Sbjct: 120 VTNSNARLRSEENE 133



 Score =  101 bits (242), Expect = 3e-22
 Identities = 43/62 (69%), Positives = 51/62 (82%)
 Frame = +3

Query: 81  IRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGPT 260
           + PV RP I  KR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYG  
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 261 RR 266
           ++
Sbjct: 62  KK 63


>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 34.3 bits (75), Expect = 0.059
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = -3

Query: 296 YGIHLGAYDGSSCWTVTDV--GHQV--LTLESPADSVVNTSRFTPIPLKFVIAIRLMPDK 129
           YG H GA  G+   T+TD+   H+V  L +E  A  ++ T++FTP  + F+ A  +    
Sbjct: 491 YGTHEGAMYGTKLDTITDIIENHKVAILDVEPQALKILRTAKFTPY-VVFISAPSIKGIN 549

Query: 128 SLRP 117
            +RP
Sbjct: 550 DIRP 553


>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
          Length = 1002

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 343 KQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 474
           +Q ++   R  C   +A    G  P+  H+  + GR  PVPG+R
Sbjct: 774 QQRLIEHHRKNCPRLQATIRFGPDPSVAHRYRKQGRPVPVPGKR 817


>SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 337 DAKQ-EVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 474
           D+KQ EV R +    +F+ A      S    H+  + GR  PVPG+R
Sbjct: 662 DSKQLEVFREEWDGVVFDAAIEKAHPSDIVAHRYRKQGRPVPVPGKR 708


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 14  FSCGRVTAWFTVAFLK 61
           FSCG V A+FTVAF K
Sbjct: 581 FSCGSVVAFFTVAFSK 596


>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
          Length = 291

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = +2

Query: 230 LDAQHRLRSNKKTRHMLPN-GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIV 406
           LDA+ +    K+ +H+L N  F  VLV +++E E    Q ++   EIA  + ++  +L  
Sbjct: 85  LDAKRK--KFKQEKHLLYNLEFSPVLVLDLEESEKSAKQEKESDEEIARRLQAEIERLRE 142

Query: 407 ERAQQLSIRVTNAAARLRSQENE 475
           E ++ L  +     A++R +E +
Sbjct: 143 EGSRLLQEQQELLKAQIREEEQK 165


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 433 SDAELLGSFHDQLPLLRRDTVSDLCAVLPVLHH 335
           S+ E  GSF D++   RRDT S +C    +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332


>SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)
          Length = 613

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 209 QAIQGSILDAQHRLRSNKKTRHMLPNGFRKVLVHN 313
           + +  +  +A+H+    K+T  ++P G +K+L HN
Sbjct: 302 KTVSNAFFNARHQY---KRTHQLIPRGLKKLLTHN 333


>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
          Length = 124

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 401 SASASSKRHRERSLRSTSCFASSRFPAL*HCEL 303
           S   + +R  +RS + ++C AS R P+   CEL
Sbjct: 21  STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53


>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 189 GIDNRVRRRFKGQYLMPNIGYGP 257
           GI+N +R  FKG +L+   G GP
Sbjct: 123 GIENGLRYNFKGHFLVDTKGAGP 145


>SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 337 DAKQ-EVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 474
           D+KQ EV R +     F+ A      S    H+  + GR  PVPG+R
Sbjct: 170 DSKQLEVFREEWDGVAFDAAIEQVHPSHIVAHRYRKKGRPVPVPGKR 216


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +3

Query: 30  SPRGSLSRFLKKHTRWTIRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 209
           SPRG  SR      R T R    P++  +R++       +R D+ +   R PR    R R
Sbjct: 305 SPRGQSSR-----ERNTKRKSKSPSLERRRSRARRSRSIERRDRRRSRSRSPRSSLGRSR 359

Query: 210 RR 215
           RR
Sbjct: 360 RR 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,036,672
Number of Sequences: 59808
Number of extensions: 293814
Number of successful extensions: 1127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)