Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00268
         (508 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for ...   124   2e-28
BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32 p...   124   2e-28
BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32 p...   124   2e-28
AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32 p...   124   2e-28
BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.       100   3e-21
BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.      45   1e-04
BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.      43   5e-04
D86981-1|BAA13217.1|  681|Homo sapiens KIAA0228 protein protein.       29   9.3  
BC018121-1|AAH18121.1|  585|Homo sapiens amyloid beta precursor ...    29   9.3  
AF017782-1|AAC83973.1|  585|Homo sapiens PAT1 protein.                 29   9.3  

>X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for
           ribosomal protein L32. ).
          Length = 135

 Score =  124 bits (299), Expect = 2e-28
 Identities = 61/86 (70%), Positives = 69/86 (80%)
 Frame = +2

Query: 218 QGSILDAQHRLRSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 397
           +G IL       SNKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50  KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109

Query: 398 LIVERAQQLSIRVTNAAARLRSQENE 475
            IVERA QL+IRVTN  ARLRS+ENE
Sbjct: 110 AIVERAAQLAIRVTNPNARLRSEENE 135



 Score =  110 bits (264), Expect = 3e-24
 Identities = 47/62 (75%), Positives = 54/62 (87%)
 Frame = +3

Query: 81  IRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGPT 260
           +RP+ +P I  KRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYG  
Sbjct: 4   LRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSN 63

Query: 261 RR 266
           ++
Sbjct: 64  KK 65


>BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  124 bits (299), Expect = 2e-28
 Identities = 61/86 (70%), Positives = 69/86 (80%)
 Frame = +2

Query: 218 QGSILDAQHRLRSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 397
           +G IL       SNKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50  KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109

Query: 398 LIVERAQQLSIRVTNAAARLRSQENE 475
            IVERA QL+IRVTN  ARLRS+ENE
Sbjct: 110 AIVERAAQLAIRVTNPNARLRSEENE 135



 Score =  110 bits (264), Expect = 3e-24
 Identities = 47/62 (75%), Positives = 54/62 (87%)
 Frame = +3

Query: 81  IRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGPT 260
           +RP+ +P I  KRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYG  
Sbjct: 4   LRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSN 63

Query: 261 RR 266
           ++
Sbjct: 64  KK 65


>BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  124 bits (299), Expect = 2e-28
 Identities = 61/86 (70%), Positives = 69/86 (80%)
 Frame = +2

Query: 218 QGSILDAQHRLRSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 397
           +G IL       SNKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50  KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109

Query: 398 LIVERAQQLSIRVTNAAARLRSQENE 475
            IVERA QL+IRVTN  ARLRS+ENE
Sbjct: 110 AIVERAAQLAIRVTNPNARLRSEENE 135



 Score =  110 bits (264), Expect = 3e-24
 Identities = 47/62 (75%), Positives = 54/62 (87%)
 Frame = +3

Query: 81  IRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGPT 260
           +RP+ +P I  KRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYG  
Sbjct: 4   LRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSN 63

Query: 261 RR 266
           ++
Sbjct: 64  KK 65


>AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  124 bits (299), Expect = 2e-28
 Identities = 61/86 (70%), Positives = 69/86 (80%)
 Frame = +2

Query: 218 QGSILDAQHRLRSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 397
           +G IL       SNKKT+HMLP+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK
Sbjct: 50  KGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRK 109

Query: 398 LIVERAQQLSIRVTNAAARLRSQENE 475
            IVERA QL+IRVTN  ARLRS+ENE
Sbjct: 110 AIVERAAQLAIRVTNPNARLRSEENE 135



 Score =  110 bits (264), Expect = 3e-24
 Identities = 47/62 (75%), Positives = 54/62 (87%)
 Frame = +3

Query: 81  IRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGPT 260
           +RP+ +P I  KRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYG  
Sbjct: 4   LRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSN 63

Query: 261 RR 266
           ++
Sbjct: 64  KK 65


>BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.
          Length = 107

 Score =  100 bits (239), Expect = 3e-21
 Identities = 47/73 (64%), Positives = 57/73 (78%)
 Frame = +2

Query: 257 NKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 436
           NKKT+H+LP+GF K LVHNVKELE+L++ N+ YC EI H VSSK  K I+ERA Q+ IRV
Sbjct: 35  NKKTKHILPSGFWKFLVHNVKELEVLLVSNKSYCVEITHDVSSKNCKAILERAAQVVIRV 94

Query: 437 TNAAARLRSQENE 475
           TNA A L S E+E
Sbjct: 95  TNANASLHSAESE 107


>BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.
          Length = 33

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +3

Query: 81  IRPVYRPTIXXKRTKRFIRHQSDRYDKLKR 170
           +R + +P I  KRTK+FIRHQSDRY K+KR
Sbjct: 4   LRSLVKPKIVKKRTKKFIRHQSDRYVKIKR 33


>BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.
          Length = 82

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = +3

Query: 81  IRPVYRPTIXXKRTKRFIRHQSDRYDKLK 167
           +R + +P I  KRTK+FIRHQSDRY K+K
Sbjct: 4   LRSLVKPKIVKKRTKKFIRHQSDRYVKIK 32


>D86981-1|BAA13217.1|  681|Homo sapiens KIAA0228 protein protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 269 RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 403
           RH+L + F+ ++ H VK   +L     + C+ IA   ++ K K I
Sbjct: 172 RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 216


>BC018121-1|AAH18121.1|  585|Homo sapiens amyloid beta precursor
           protein (cytoplasmic tail) binding protein 2 protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 269 RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 403
           RH+L + F+ ++ H VK   +L     + C+ IA   ++ K K I
Sbjct: 76  RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 120


>AF017782-1|AAC83973.1|  585|Homo sapiens PAT1 protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 269 RHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 403
           RH+L + F+ ++ H VK   +L     + C+ IA   ++ K K I
Sbjct: 76  RHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAI 120


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,974,479
Number of Sequences: 237096
Number of extensions: 1431248
Number of successful extensions: 3950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3950
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)