Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00268
         (508 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal prot...   126   2e-29
U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal prot...   126   2e-29
BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p pro...   126   2e-29
AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p pro...   126   2e-29
AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB...   126   2e-29
AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA...   126   2e-29
AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC...   126   2e-29
X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal prot...   110   9e-25
BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p pro...    43   2e-04
X04132-3|CAA27749.1|  455|Drosophila melanogaster protein ( Dros...    28   6.3  
AY928609-1|AAX28842.1|  451|Drosophila melanogaster ORF2 protein.      28   6.3  
AE014297-100|ABI31129.1|  299|Drosophila melanogaster CG41463-PA...    28   6.3  

>Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  126 bits (303), Expect = 2e-29
 Identities = 58/74 (78%), Positives = 66/74 (89%)
 Frame = +2

Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 434 VTNAAARLRSQENE 475
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134



 Score =  114 bits (274), Expect = 7e-26
 Identities = 50/63 (79%), Positives = 52/63 (82%)
 Frame = +3

Query: 78  TIRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGP 257
           TIRP YRP I  KRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG 
Sbjct: 2   TIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGS 61

Query: 258 TRR 266
            +R
Sbjct: 62  NKR 64


>U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  126 bits (303), Expect = 2e-29
 Identities = 58/74 (78%), Positives = 66/74 (89%)
 Frame = +2

Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 434 VTNAAARLRSQENE 475
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134



 Score =  114 bits (274), Expect = 7e-26
 Identities = 50/63 (79%), Positives = 52/63 (82%)
 Frame = +3

Query: 78  TIRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGP 257
           TIRP YRP I  KRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG 
Sbjct: 2   TIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGS 61

Query: 258 TRR 266
            +R
Sbjct: 62  NKR 64


>BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p
           protein.
          Length = 147

 Score =  126 bits (303), Expect = 2e-29
 Identities = 58/74 (78%), Positives = 66/74 (89%)
 Frame = +2

Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 74  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 133

Query: 434 VTNAAARLRSQENE 475
           +TN   RLRSQENE
Sbjct: 134 LTNPNGRLRSQENE 147



 Score =  114 bits (275), Expect = 6e-26
 Identities = 50/65 (76%), Positives = 53/65 (81%)
 Frame = +3

Query: 72  RWTIRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGY 251
           + TIRP YRP I  KRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGY
Sbjct: 13  KMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGY 72

Query: 252 GPTRR 266
           G  +R
Sbjct: 73  GSNKR 77


>AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p
           protein.
          Length = 134

 Score =  126 bits (303), Expect = 2e-29
 Identities = 58/74 (78%), Positives = 66/74 (89%)
 Frame = +2

Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 434 VTNAAARLRSQENE 475
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134



 Score =  114 bits (274), Expect = 7e-26
 Identities = 50/63 (79%), Positives = 52/63 (82%)
 Frame = +3

Query: 78  TIRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGP 257
           TIRP YRP I  KRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG 
Sbjct: 2   TIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGS 61

Query: 258 TRR 266
            +R
Sbjct: 62  NKR 64


>AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB,
           isoform B protein.
          Length = 134

 Score =  126 bits (303), Expect = 2e-29
 Identities = 58/74 (78%), Positives = 66/74 (89%)
 Frame = +2

Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 434 VTNAAARLRSQENE 475
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134



 Score =  114 bits (274), Expect = 7e-26
 Identities = 50/63 (79%), Positives = 52/63 (82%)
 Frame = +3

Query: 78  TIRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGP 257
           TIRP YRP I  KRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG 
Sbjct: 2   TIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGS 61

Query: 258 TRR 266
            +R
Sbjct: 62  NKR 64


>AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA,
           isoform A protein.
          Length = 134

 Score =  126 bits (303), Expect = 2e-29
 Identities = 58/74 (78%), Positives = 66/74 (89%)
 Frame = +2

Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 434 VTNAAARLRSQENE 475
           +TN   RLRSQENE
Sbjct: 121 LTNPNGRLRSQENE 134



 Score =  114 bits (274), Expect = 7e-26
 Identities = 50/63 (79%), Positives = 52/63 (82%)
 Frame = +3

Query: 78  TIRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGP 257
           TIRP YRP I  KRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG 
Sbjct: 2   TIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGS 61

Query: 258 TRR 266
            +R
Sbjct: 62  NKR 64


>AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC,
           isoform C protein.
          Length = 147

 Score =  126 bits (303), Expect = 2e-29
 Identities = 58/74 (78%), Positives = 66/74 (89%)
 Frame = +2

Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 74  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 133

Query: 434 VTNAAARLRSQENE 475
           +TN   RLRSQENE
Sbjct: 134 LTNPNGRLRSQENE 147



 Score =  114 bits (275), Expect = 6e-26
 Identities = 50/65 (76%), Positives = 53/65 (81%)
 Frame = +3

Query: 72  RWTIRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGY 251
           + TIRP YRP I  KRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGY
Sbjct: 13  KMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGY 72

Query: 252 GPTRR 266
           G  +R
Sbjct: 73  GSNKR 77


>X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 133

 Score =  110 bits (265), Expect = 9e-25
 Identities = 49/63 (77%), Positives = 51/63 (80%)
 Frame = +3

Query: 78  TIRPVYRPTIXXKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGP 257
           TIRP YRP I  KRTK FIRHQSDRY KL   WRKP+GIDNRV RRFKGQYLMPNIGYG 
Sbjct: 2   TIRPAYRPKIVKKRTKDFIRHQSDRYAKLSHKWRKPKGIDNRVGRRFKGQYLMPNIGYGS 61

Query: 258 TRR 266
            +R
Sbjct: 62  NKR 64



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 35/60 (58%), Positives = 46/60 (76%)
 Frame = +2

Query: 254 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 433
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQN +   E+    S  + K I+ERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNPRLLREMP-TASPPRSKEIIERAKQLSLR 119


>BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p
           protein.
          Length = 126

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/77 (35%), Positives = 39/77 (50%)
 Frame = +1

Query: 253 VQQEDPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQ 432
           ++Q  P +A   I   P +Q  RAG    A+  +LRRDR R L +EA+ D     AA   
Sbjct: 28  IEQAHPPHAAHRIQEVPGAQRARAGGPAHAEPRLLRRDRPRRLLQEAQGDCRARQAAVGP 87

Query: 433 SDECGRSPPVPGERINI 483
             +  RSP    ER+++
Sbjct: 88  PHQPQRSPAFSRERVSL 104



 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 191 Y*QQSPQAIQGSILDAQHRLR 253
           Y QQS   +QG++ DAQHRLR
Sbjct: 7   YRQQSASPLQGTVSDAQHRLR 27


>X04132-3|CAA27749.1|  455|Drosophila melanogaster protein (
           Drosophila retrotransposon412 genome. ).
          Length = 455

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
 Frame = +2

Query: 248 LRSNKKTRHMLPNGFRKVLVHNVKELEILMMQN-----RKYCAEIAHGVSSKKRKLI-VE 409
           L  N+ T+ +  N   +VLV++  E+  L+ QN     RK CA+  + + + + KLI ++
Sbjct: 28  LTQNRSTQAVTINRNAQVLVNSYNEIRELIQQNRKNLERKQCAKALNLLVTLREKLIFIK 87

Query: 410 RAQQLSIRV-TNAAARLRSQENE 475
               L I + T     LR   NE
Sbjct: 88  NKFSLQIEIPTIVNTPLRINLNE 110


>AY928609-1|AAX28842.1|  451|Drosophila melanogaster ORF2 protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
 Frame = +2

Query: 248 LRSNKKTRHMLPNGFRKVLVHNVKELEILMMQN-----RKYCAEIAHGVSSKKRKLI-VE 409
           L  N+ T+ +  N   +VLV++  E+  L+ QN     RK CA+  + + + + KLI ++
Sbjct: 24  LTQNRSTQAVTINRNAQVLVNSYNEIRELIQQNRKNLERKQCAKALNLLVTLREKLIFIK 83

Query: 410 RAQQLSIRV-TNAAARLRSQENE 475
               L I + T     LR   NE
Sbjct: 84  NKFSLQIEIPTIVNTPLRINLNE 106


>AE014297-100|ABI31129.1|  299|Drosophila melanogaster CG41463-PA
           protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 328 NLDDAKQEVLRRDRSRCL-FEEAEADRGKSPAAQHQS 435
           NL  ++   LRR RSRCL +      R  SP+ +H S
Sbjct: 132 NLSRSRSRTLRRSRSRCLGWSCWSLRRSPSPSRRHHS 168


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,733,122
Number of Sequences: 53049
Number of extensions: 435827
Number of successful extensions: 1176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)