Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00267
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 43 4e-05
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 42 7e-05
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 31 0.17
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 28 1.2
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 27 2.8
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 3.7
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei... 26 5.0
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 26 5.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 6.5
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 25 6.5
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 6.5
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch... 25 8.7
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 25 8.7
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 8.7
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 42.7 bits (96), Expect = 4e-05
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 313 KLNEGRRIDYVLQEAPLEVINEYLFAMTSHVGYWESEDTMLLMLREIYADMGV 471
+LNE ++DYV A + N+YL +++H YW SED ++ E + G+
Sbjct: 596 ELNENSQLDYVFTSAHGVISNKYLSMLSAHSSYWSSEDLACFLVVETGRNFGI 648
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 41.9 bits (94), Expect = 7e-05
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 2 FHPYDPIAYRIEPLINPGLKNVKPEQIPHHK 94
FHP DPI+YR+EPL+ + +KP++I H +
Sbjct: 608 FHPTDPISYRVEPLVVKQMARLKPQKISHFR 638
Score = 41.5 bits (93), Expect = 9e-05
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 301 EMLGKLNEGRRIDYVLQEAPLEVINEYLFAMTSHVGYWESEDTMLLMLREI 453
E + +LN+ RID++LQE L+ Y+ AM +H YW++ D +L ++
Sbjct: 706 ERMYRLNKTGRIDFMLQEGALDTSYSYVSAMNAHSEYWKNVDLAHFILTQL 756
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 30.7 bits (66), Expect = 0.17
Identities = 25/98 (25%), Positives = 42/98 (42%)
Frame = +1
Query: 31 NRAADKPRTEERETGADTAPQGKEEDAPGTERHHGPRRG*SEAEIH*FAEDNVEQMETSI 210
N+ +K +EE + KEE P +R G E+ +D++E E +
Sbjct: 252 NQLENKAISEEEANSTEPPNVEKEEPKPSVDRSTGIVNSEDIKELS-VEDDSLELKEITP 310
Query: 211 DRGTIGEGSRRN*KSQLFDEREDGSSNATREMLGKLNE 324
+ IG+ S +Q ++ED +E+ KLNE
Sbjct: 311 EALDIGQTSLFTTLNQTQVKKEDNKKFLLKEINAKLNE 348
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 401 TSDTGSPKTRXXXXXARSTRIWESIRTPRSLSRASRTEDETPETGRSDYAR 553
T +G+PK++ A ST+ W S TPRS S+ + + ++++ R
Sbjct: 407 TKVSGTPKSKH----AGSTQEWHSHTTPRSTSKHENNLNNITNSAKNEHIR 453
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 125 DTMARVGADLKQKFIDSLKTTWNKWKPQST 214
+++ V AD+ KF+ +L TW +++ Q T
Sbjct: 168 ESLTGVEADITTKFLSTLADTWPEFEEQCT 197
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 334 IDYVLQEAPLEVINEYLFAMTSHVGYWESEDTM 432
I YVL++ P I +YL H GY +EDT+
Sbjct: 471 IFYVLKDVPWS-ITKYLPQALQHSGYLIAEDTL 502
>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 393 HGEQVLVDDLEWRLLEHVVDPAALI 319
H ++ +DD+EW L+ DP +L+
Sbjct: 39 HNKEPWMDDVEWETLDAQKDPNSLL 63
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 470 SIRTPRSLSRASRTEDETPETGRSDYARESDDK 568
SI L+ S ED TPE DY + +++
Sbjct: 27 SIEGMEDLTEISMLEDYTPEAANKDYVGQQEEE 59
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 357 RLLEHVVDPAALIQLAEHLARRIARTVFPFI 265
+LLE + P ++ LA A I TVFP+I
Sbjct: 1607 KLLELISQPVSVENLAPMYAVDIIATVFPYI 1637
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 519 SSSVREALLRDRGVRIDSHIRVDLAQH 439
SSS R AL + + +D H+RVD H
Sbjct: 236 SSSARSALSLNGTMFMDRHLRVDSVSH 262
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 29 RIEPLINPGLKNVKPEQIPHHKGRKRMHLELKDTMARVGADLKQKFIDSL 178
++ P KN++ + K + +LE + + A+LK+KF+D+L
Sbjct: 90 KLRPYSKYASKNIELKLQKKEKEEELRNLEEEKAKKKKDANLKRKFLDTL 139
>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 442
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 307 LGKLNEGRRIDYVLQEAPLEVINEYLFAMTSHVGYWESEDTMLLMLREI 453
L K+ GR ID+VL A E+ + LFA +++ E +T++L +++
Sbjct: 239 LSKVRHGR-IDFVLDNAGFELFVDLLFA--TYLLKTEIAETIILHPKDV 284
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 467 ESIRTPRSLSRASRTEDETPETGRSDYARESDDKS 571
ES PR+ S +E+E E + E+DD++
Sbjct: 296 ESTAEPRAAGEESASEEEEEEEEEEEEENEADDET 330
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 16 SDSVQNRAADKPRTEERETGADTAPQGKEEDAPGTERHHGPRRG 147
S SV+N + K ++E E TAP E A G ++ +G
Sbjct: 149 STSVENAESAKGSSDENEANTATAPSSNE--ANGVDKKQNEIKG 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,683
Number of Sequences: 5004
Number of extensions: 42223
Number of successful extensions: 140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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