Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00267
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)                    70   1e-12
SB_17419| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)                  29   2.9  
SB_58257| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_20155| Best HMM Match : Fe_dep_repress (HMM E-Value=2.6)            29   3.9  
SB_39897| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-13)                 28   5.1  
SB_50182| Best HMM Match : MAGE (HMM E-Value=0.18)                     28   5.1  
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_42561| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_11638| Best HMM Match : Kinesin (HMM E-Value=5.5e-10)               27   9.0  
SB_53533| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_12054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
          Length = 1123

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 34/63 (53%), Positives = 42/63 (66%)
 Frame = +2

Query: 2   FHPYDPIAYRIEPLINPGLKNVKPEQIPHHKGRKRMHLELKDTMARVGADLKQKFIDSLK 181
           FHP    AYR+EPL++       P  I HHKGRKRMHLEL+D ++R GA LK   I+S+K
Sbjct: 440 FHP----AYRLEPLVDSTFVK-DPIMIKHHKGRKRMHLELRDNLSRFGATLKASLIESVK 494

Query: 182 TTW 190
            TW
Sbjct: 495 NTW 497



 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = +1

Query: 307 LGKLNEGRRIDYVLQEAPLEVINEYLFAMTSHVGY 411
           +G+LN G RIDYVLQE PLE +NEYLFA++SHV Y
Sbjct: 548 IGQLNSGDRIDYVLQERPLESLNEYLFALSSHVCY 582


>SB_17419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 2   FHPYDPIAYRIEPLINPGLKNVKPEQIP-HHK 94
           FHP+DP A RIEPLI P   ++ P  +P +HK
Sbjct: 68  FHPFDPSASRIEPLILPQFSHIIPVNVPRYHK 99


>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 459 GYGSRSGLHGPSAEPHGQRTRLQRQDGVITRESPTTSHS 575
           GY S S  HGP   PH  R+    + G +     TTSHS
Sbjct: 290 GYMSDSYAHGPRTPPHSVRS----EPGYVRSAVATTSHS 324


>SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)
          Length = 1009

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 56  LKNVKPEQIPHHKGRKRMHLELKDTMARVGADLKQKFIDSLK 181
           +K+VKPE+ P   G  RM  +   +  ++  D+  KF+DSLK
Sbjct: 796 MKSVKPERKPDPSGSGRMIEDYWGSSQKILGDM--KFLDSLK 835


>SB_58257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 8   PYDPIAYRIEPLINPGLKNVKPEQIPHHKGRKRMHLELKDTMARVG 145
           PY P  YR  PL   G       ++  HK   R+H  L    A++G
Sbjct: 208 PYSPPVYRSYPLSIFGYSRQTQRKLLRHKRGCRVHRRLSRACAKLG 253


>SB_20155| Best HMM Match : Fe_dep_repress (HMM E-Value=2.6)
          Length = 310

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 52  RTEERETGADTAPQGKEEDAPGTERHHG 135
           + +ER T A++ PQ   +D PG  + HG
Sbjct: 6   KVKERTTSAESIPQTDLDDKPGKLKRHG 33


>SB_39897| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-13)
          Length = 303

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -1

Query: 405 DVAGHGEQVLVDDLEWRLLEHVVDPAALIQLAEHLARRIARTVFPFI 265
           +++G   Q+L+ D  + +L  ++  A+L  L      R+  T++PF+
Sbjct: 91  EISGRKYQILIGDTTFCVLYGIISSASLFSLVCISLERMCATLWPFL 137


>SB_50182| Best HMM Match : MAGE (HMM E-Value=0.18)
          Length = 206

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = -1

Query: 456 VDLAQHQQHRVFGLPVSDVAGHGE---QVLVDDLEWRLLEHVVD 334
           ++L+  Q H+VFG+ + +V G G+    +L+D+L+   +  ++D
Sbjct: 94  MELSTKQLHKVFGIELVEVEGSGKAKVYMLLDELDREEMHEMLD 137


>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 419 PKTRXXXXXARSTRIWESIRTPRSLSRASRTEDETPETGRSDYARESDDKS 571
           P+ R     +   R  E  R PRS  R SR +DE           E+D+KS
Sbjct: 634 PQRRGSRGRSPGRREREGERRPRSAERQSRRQDEPKGEPHVVQPEETDEKS 684


>SB_42561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 394 TSHVGYWESEDTMLLMLREIYADMGVDPDSTVPQQSL 504
           T  +GY E ED    MLR      G+DPD+T   Q++
Sbjct: 304 TPFIGYDEGEDRP--MLRFSNKQCGIDPDATKDPQTM 338


>SB_11638| Best HMM Match : Kinesin (HMM E-Value=5.5e-10)
          Length = 208

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 301 EMLGKLNEGRRIDYVLQEAPLEVINEYLFAMTSHVG 408
           E+L   NE   +DY L  A LEV NE L  +    G
Sbjct: 16  ELLRVCNERPNVDYTLSLAMLEVYNETLKDLLEEFG 51


>SB_53533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 394 TSHVGYWESEDTMLLMLREIYADMGVDPDSTVPQQSL 504
           T  +GY E ED    MLR      G+DPD+T   Q++
Sbjct: 23  TPFIGYDEGEDRP--MLRFSNKQCGIDPDATKDPQTM 57


>SB_12054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 23  AYRIEPLINPGLKNVKPEQIPHHKGRKRMHLELK 124
           AYR+EPLI+    +V P Q+      K  +LE K
Sbjct: 1   AYRMEPLISEEYSSVPPIQLHRFDSHKLGYLEEK 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,635,146
Number of Sequences: 59808
Number of extensions: 347907
Number of successful extensions: 1247
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)