Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00267
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.4  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 10  LRSDSVQNRAADKPRTEERET 72
           +R+DS +NR+  +P T + +T
Sbjct: 328 MRNDSERNRSPVRPATVQYDT 348


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 415 ESEDTMLLMLREIYADMGVDPDSTVPQQSLTDRGRDSR 528
           E  DT+   LRE+ AD+      T    S+T   R  R
Sbjct: 68  EPFDTLDTFLRELQADLAEASQPTSTTTSVTPSCRRQR 105


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 268 HQTIDFFNFFDYLLQLFLGRLRFPF 194
           H   D   +F YL Q  +GR  F F
Sbjct: 322 HVDPDVVQYFGYLPQDMVGRSLFDF 346


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 268 HQTIDFFNFFDYLLQLFLGRLRFPF 194
           H   D   +F YL Q  +GR  F F
Sbjct: 28  HVDPDVVQYFGYLPQDMVGRSLFDF 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,347
Number of Sequences: 438
Number of extensions: 2942
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)