Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00267
(609 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31480.1 68414.m03854 shoot gravitropism 2 (SGR2) Plant Cell ... 57 1e-08
At5g61350.1 68418.m07698 protein kinase family protein contains ... 29 1.8
At4g14230.1 68417.m02196 CBS domain-containing protein-related c... 29 1.8
At4g33700.1 68417.m04786 CBS domain-containing protein contains ... 29 2.4
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 28 4.2
At5g59420.1 68418.m07446 oxysterol-binding family protein simila... 27 7.4
At5g44635.1 68418.m05469 minichromosome maintenance family prote... 27 7.4
At1g29470.1 68414.m03605 dehydration-responsive protein-related ... 27 7.4
At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP... 27 9.7
At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP... 27 9.7
At4g11640.1 68417.m01861 serine racemase, putative similar to se... 27 9.7
At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein, pu... 27 9.7
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 27 9.7
>At1g31480.1 68414.m03854 shoot gravitropism 2 (SGR2) Plant Cell
2002 Jan;14:33-46 PMID:11826297; similar to
phospholipase [Homo sapiens] GI:4760647; identical to
cDNA PF02862: DDHD domain
Length = 933
Score = 56.8 bits (131), Expect = 1e-08
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +2
Query: 2 FHPYDPIAYRIEPLINPGLKNVKPEQIPHHKGRKRMHLELKD 127
FHPYDP+AYR+EPL+ +P IP+H+G KR+H+ L+D
Sbjct: 722 FHPYDPVAYRVEPLVCKEYLPERPVIIPYHRGGKRLHIGLQD 763
Score = 50.4 bits (115), Expect = 9e-07
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +1
Query: 265 DEREDGSSNATR-EMLGKLNEGRRIDYVLQEAPLEVINEYLFAMTSHVGYWESEDTMLLM 441
DE++D S + E L +GR ID++LQE E + YL A+ +H YW +DT L +
Sbjct: 806 DEKDDRSYGSLMIERLTGTRDGR-IDHMLQEKTFE--HPYLQAIGAHTNYWRDQDTALFI 862
Query: 442 LREIYADMGVDPDSTVPQQSLTDRGRDS 525
++ +Y ++ P+S D +DS
Sbjct: 863 IKHLYRELPDGPNSPTESTEGDDSPKDS 890
>At5g61350.1 68418.m07698 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 842
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 77 QIPHHKGRKRMHLELKDTMARVGADLKQKFIDSLKTTWNKWKPQST 214
Q P KG LE+ + +G DL ID L TW KP +T
Sbjct: 201 QAPDFKGLSSFSLEILHRI-NIGGDLISPKIDPLSRTWLSDKPYNT 245
>At4g14230.1 68417.m02196 CBS domain-containing protein-related
contains Pfam profile PF01595: Domain of unknown
function
Length = 495
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 363 RGHQRVPVRHDQPRRILGV 419
RGH RVPV D P+ ++G+
Sbjct: 257 RGHSRVPVYSDNPKNVIGL 275
>At4g33700.1 68417.m04786 CBS domain-containing protein contains
Pfam profiles PF00571: CBS domain, PF01595: Domain of
unknown function
Length = 424
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 363 RGHQRVPVRHDQPRRILGV 419
+GH RVPV ++QP I+G+
Sbjct: 236 KGHSRVPVYYEQPTNIIGL 254
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 16 SDSVQNRAADKPRTEE--RETGADTAPQGKEEDAPGTE 123
+DS + D+ +T+E RE+G DT+ + E+D+ TE
Sbjct: 435 TDSSNTQKGDEQKTDESKRESGNDTSNKETEDDSSKTE 472
>At5g59420.1 68418.m07446 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profile PF01237:
Oxysterol-binding protein
Length = 457
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 8 PYDPIAYRIEPLINPGLKNVKPEQIPHHKGRKRMHLELKDTMARVGADLKQKFI 169
P++PI ++N G + EQ+ HH H E + + + + LK K +
Sbjct: 144 PFNPILGETYEMVNHGGISFISEQVSHHPPMSAGHAENEHFIYDITSKLKTKLL 197
>At5g44635.1 68418.m05469 minichromosome maintenance family protein
/ MCM family protein similar to SP|P97311 DNA
replication licensing factor MCM6 {Mus musculus};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 831
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 248 QFLRLPSPIVPRSIEVSICSTLSSANQ*ISASDQPRRGPWCL 123
QFL+ + IVPRS+ S S+ S+A + + +P G +C+
Sbjct: 403 QFLKYTAGIVPRSVYTSGKSS-SAAGLTATVAKEPETGEFCI 443
>At1g29470.1 68414.m03605 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/95 (22%), Positives = 44/95 (46%)
Frame = +1
Query: 40 ADKPRTEERETGADTAPQGKEEDAPGTERHHGPRRG*SEAEIH*FAEDNVEQMETSIDRG 219
+D+ + +E+ +++ + K ED+ GTE + G +E + A + E E S D
Sbjct: 142 SDETKQKEKTQLEESSEENKSEDSNGTEENAGESEENTEKKSEENAGETEESTEKSKDVF 201
Query: 220 TIGEGSRRN*KSQLFDEREDGSSNATREMLGKLNE 324
G+ ++++ E GS + +++ NE
Sbjct: 202 PAGD------QAEITKESSTGSGAWSTQLVESQNE 230
>At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP1)
identical to biotin carboxyl carrier protein of
acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
gi|9759121|dbj|BAB09606
Length = 254
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 277 DGSSNATREMLGKLNEGRRIDYVLQEAPLEVINEYLFAMTSHVGYWESEDTMLLMLREIY 456
DG S+A + L E L A E I+E+L +T+ V +S D + L L+++
Sbjct: 79 DGPSSAEGKEKNSLKESSASSPEL--ATEESISEFLTQVTTLVKLVDSRDIVELQLKQLD 136
Query: 457 ADMGVDPDSTVPQ 495
++ + +PQ
Sbjct: 137 CELVIRKKEALPQ 149
>At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP1)
identical to biotin carboxyl carrier protein of
acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
gi|9759121|dbj|BAB09606
Length = 280
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 277 DGSSNATREMLGKLNEGRRIDYVLQEAPLEVINEYLFAMTSHVGYWESEDTMLLMLREIY 456
DG S+A + L E L A E I+E+L +T+ V +S D + L L+++
Sbjct: 79 DGPSSAEGKEKNSLKESSASSPEL--ATEESISEFLTQVTTLVKLVDSRDIVELQLKQLD 136
Query: 457 ADMGVDPDSTVPQ 495
++ + +PQ
Sbjct: 137 CELVIRKKEALPQ 149
>At4g11640.1 68417.m01861 serine racemase, putative similar to
serine racemase [Mus musculus] GI:6448865; contains Pfam
profile PF00291: Pyridoxal-phosphate dependent enzyme
Length = 346
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -1
Query: 531 VSGVSSSVREALLRDRGVRIDSHIRVDLAQHQ-QHRVFGLPVSDVAGHGEQVLVDDLEWR 355
+SGV+ + + R + + D AQ + ++ LPV++ G + + DL W
Sbjct: 205 ISGVALAAKSIKPSIRIIAAEPKGADDAAQSKVAGKIITLPVTNTIADGLRASLGDLTWP 264
Query: 354 LLEHVVDPAALIQLAE 307
++ +VD ++ E
Sbjct: 265 VVRDLVDDVVTLEECE 280
>At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein GI:3849833
from [Arabidopsis thaliana]; contains Pfam profiles
PF00005: ABC transporter and PF00664: ABC transporter
transmembrane region; identical to cDNA MDR-like
p-glycoprotein (At3g28860) GI:24324261
Length = 1252
Score = 27.1 bits (57), Expect = 9.7
Identities = 25/70 (35%), Positives = 32/70 (45%)
Frame = -3
Query: 277 LPFHQTIDFFNFFDYLLQLFLGRLRFPFVPRCLQRINEFLLQISPDAGHGVFQFQVHPLP 98
LPF + F + FDYLL +F+G L V + FLL G G Q +H +
Sbjct: 24 LPFFKLFSFADKFDYLL-MFVGSLG-AIVHGSSMPV-FFLLFGQMVNGFGKNQMDLHQMV 80
Query: 97 SLVVRYLLRF 68
V RY L F
Sbjct: 81 HEVSRYSLYF 90
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 396 GHGEQVLVDDLEWRLLEHVVDPAALI-QLAEHLARRIA 286
GHG Q+L DD+ + + A+ + QL E+ AR+IA
Sbjct: 620 GHGAQLLKDDIHYFTSKMANSAASFVMQLYEYGARQIA 657
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,175,473
Number of Sequences: 28952
Number of extensions: 235516
Number of successful extensions: 851
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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