Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00265X
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           44   8e-05
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    32   0.33 
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    29   2.3  
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383...    27   7.2  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = -3

Query: 88 GKVHGSLARAGKVKGQTPKV 29
          GKVHGSLARAGKV+GQTPKV
Sbjct: 2  GKVHGSLARAGKVRGQTPKV 21


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 248 PGVHWSDQGTHSYSCCSW**RPYSIIMWS 162
           PG+HW++Q    YS CS    P  I MW+
Sbjct: 378 PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406


>02_02_0664 -
           12747888-12747900,12748161-12748229,12748332-12748395,
           12749540-12749558,12749777-12749843,12749934-12749953,
           12750079-12750248,12751646-12751823
          Length = 199

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 251 WPGVHWSDQGTHSY 210
           WPG+HWSD  T  Y
Sbjct: 53  WPGLHWSDSSTPLY 66


>06_03_1183 +
           28237467-28237612,28238035-28238089,28238216-28238354,
           28238433-28238487,28238578-28238646,28239338-28239560,
           28239645-28239740,28240708-28240827,28240937-28241062,
           28241369-28241524,28242706-28242828,28242913-28242980,
           28243119-28243254,28243365-28243530,28243615-28243853
          Length = 638

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 302 TICSCISEGNRHTSWTQWPGVHWSDQGTH 216
           TI +      +HTSW    G HW  + TH
Sbjct: 525 TISTVADLRRKHTSWKCVEGTHWHTRFTH 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,706,565
Number of Sequences: 37544
Number of extensions: 175590
Number of successful extensions: 407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)