Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00265X
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    48   4e-06
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    29   2.8  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = -3

Query: 97  LLGGKVHGSLARAGKVKGQTPKVE 26
           LLGGKVHGSLARAGKV+ QTPKV+
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVD 91


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 158  RSST***SKVFITNCSKSTNAFLDLTNGLLAIAS 259
            RS+T   S VF  +CS+++N FL  T+ +L  A+
Sbjct: 2019 RSTTLFVSNVFCNSCSQASNVFLSSTDEILTCAT 2052


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,493,462
Number of Sequences: 27780
Number of extensions: 160900
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)