Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00264
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43840| Best HMM Match : NDK (HMM E-Value=0)                        122   2e-28
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)                   30   1.4  
SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
          Length = 786

 Score =  122 bits (294), Expect = 2e-28
 Identities = 57/87 (65%), Positives = 65/87 (74%)
 Frame = +1

Query: 247 QRLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQV 426
           + LA   F+ GL KYMS  PV  MVWEGL VVKT R MLG T+PA S PGTIRGD  I +
Sbjct: 687 ESLAKLKFYDGLCKYMSQTPVCAMVWEGLGVVKTARVMLGETDPAKSLPGTIRGDFSIHI 746

Query: 427 GRNIIHGSDSVESAKKEIGLWFTDKEV 507
           GRNIIHGSD+VE+AK+EI LWF D E+
Sbjct: 747 GRNIIHGSDAVETAKEEIALWFKDDEL 773



 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 42/60 (70%), Positives = 49/60 (81%), Gaps = 5/60 (8%)
 Frame = +2

Query: 104 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD-----WHPGL 268
           ERTFIMVKPDGVQRGLVG II+RFE+KGFKLV LK V  SEE L++HY+D     ++PGL
Sbjct: 127 ERTFIMVKPDGVQRGLVGEIIKRFEQKGFKLVALKMVQESEEHLKKHYADLAHLPFYPGL 186



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/48 (66%), Positives = 39/48 (81%)
 Frame = +2

Query: 104 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHY 247
           ERTF+M+KPD V RGL+G II RFEKKGFKLV +KFV  SE+  ++HY
Sbjct: 639 ERTFLMIKPDAVSRGLIGEIISRFEKKGFKLVAMKFVKKSEDHFRKHY 686



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/59 (49%), Positives = 34/59 (57%)
 Frame = +1

Query: 253 LASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVG 429
           LA  PF+PGLVK+MSSGPVV M                    ADS+PGTIRGD C+ +G
Sbjct: 177 LAHLPFYPGLVKFMSSGPVVAM--------------------ADSKPGTIRGDFCVHIG 215


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
 Frame = +1

Query: 178  KERLQTSRFEIRMAIRRTSPATL-----QRLASRPFFPGLVKYMSSGPVVPMVWEGLNVV 342
            K+R++ + F+I++    T    L          + FF GL  YMSSGP + MV    + V
Sbjct: 692  KQRIKEAGFKIQLQKEVTLSKELASQFYHEHEGKDFFEGLTDYMSSGPTMFMVLSKEDAV 751

Query: 343  KTGRQMLGATNPADSQ---PGTIRGDLCIQVGRNIIHGSDSVESAKKEIGLWFTDKEV 507
               R ++G  +P  ++   P +IR  L   V +N++HG    E A K I  +F + ++
Sbjct: 752  SGWRSLMGPVDPEQAKEMAPESIRAALGKDVMKNVVHGPSDPEKAGKVIKEFFPEAKI 809



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
 Frame = +1

Query: 184 RLQTSRFEIRMA-----IRRTSPATLQRLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKT 348
           ++Q + FEI M+      R  +         + FF  LV  MSSGP++ +     + ++ 
Sbjct: 559 KIQEAGFEIAMSKEMHLTREQAEEFYSEHKDQEFFDTLVTNMSSGPMMALCLAREDAIEG 618

Query: 349 GRQMLG---ATNPADSQPGTIRGDLCIQVGR-NIIHGSDSVESAKKEIGLWF 492
            R MLG        D  P ++R    ++    N +HGSD+ E+A+KEI  +F
Sbjct: 619 WRGMLGPKEVEKAKDEAPESLRAQFQVEDSPINPLHGSDTAENAEKEIQKFF 670



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 433 NIIHGSDSVESAKKEIGLWFTD 498
           N +HG DS ESA +E+  +F D
Sbjct: 501 NAVHGCDSNESAARELAFFFPD 522


>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1373

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 353 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 261
           R VF T+   HT+ T G E +YF RP K+ R
Sbjct: 194 RAVFNTMVVLHTVLTKGEETLYFERPIKRPR 224


>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
          Length = 908

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 353 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 261
           R VF T+   HT+ T G + +YF RP ++ R
Sbjct: 759 RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 789


>SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 353 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 261
           R VF T+   HT+ T G + +YF RP ++ R
Sbjct: 46  RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 76


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -1

Query: 148 TTLYTIRLNHNKST---LTLFRHHEILLTCSINYTCTTA 41
           TT YT+  ++  +T    T    H    TC+ +YTCTT+
Sbjct: 149 TTSYTLTTSYTCTTSYTCTTSYTHTTSYTCTTSYTCTTS 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,917,958
Number of Sequences: 59808
Number of extensions: 413966
Number of successful extensions: 1033
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)