Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00264
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1) ... 132 3e-31
At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4) ... 120 8e-28
At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3, mitoch... 119 1e-27
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor... 119 2e-27
At1g17410.1 68414.m02126 nucleoside diphosphate kinase family pr... 69 2e-12
At3g47450.2 68416.m05160 expressed protein 31 0.86
At3g47450.1 68416.m05159 expressed protein 31 0.86
At5g67430.1 68418.m08502 GCN5-related N-acetyltransferase (GNAT)... 30 1.1
At5g51480.1 68418.m06385 multi-copper oxidase type I family prot... 29 3.5
At5g12260.1 68418.m01441 expressed protein 29 3.5
At3g51650.1 68416.m05664 expressed protein 29 3.5
At4g22980.1 68417.m03316 expressed protein ; expression supporte... 28 4.6
At3g61390.2 68416.m06872 U-box domain-containing protein several... 28 6.1
At3g61390.1 68416.m06871 U-box domain-containing protein several... 28 6.1
At2g26960.1 68415.m03234 myb family transcription factor (MYB81)... 28 6.1
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR... 28 6.1
At1g60790.1 68414.m06843 expressed protein 27 8.0
>At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1)
identical to identical to Nucleoside diphosphate kinase
I (NDK I) (NDP kinase I) (NDPK I) (SP:P39207)
[Arabidopsis thaliana]; contains Pfam PF00334 :
Nucleoside diphosphate kinase domain;
Length = 169
Score = 132 bits (318), Expect = 3e-31
Identities = 59/85 (69%), Positives = 70/85 (82%)
Frame = +1
Query: 253 LASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGR 432
L+S+ FF GLV Y+ SGPVV M+WEG NVV TGR+++GATNPA S+PGTIRGD I +GR
Sbjct: 72 LSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGR 131
Query: 433 NIIHGSDSVESAKKEIGLWFTDKEV 507
N+IHGSDSVESA+KEI LWF D V
Sbjct: 132 NVIHGSDSVESARKEIALWFPDGPV 156
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/50 (60%), Positives = 37/50 (74%)
Frame = +2
Query: 104 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD 253
E+TFIM+KPDGVQRGL+G +I RFEKKGF L GLK + ++HY D
Sbjct: 22 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYED 71
>At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4)
contains Pfam PF00334 : Nucleoside diphosphate kinase
domain; identical to nucleoside diphosphate kinase 4
(GI:11990430) [Arabidopsis thaliana]
Length = 237
Score = 120 bits (289), Expect = 8e-28
Identities = 53/85 (62%), Positives = 66/85 (77%)
Frame = +1
Query: 253 LASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGR 432
L RPFF GL ++SSGPVV MVWEG V++ GR+++GAT+P S+PGTIRGDL + VGR
Sbjct: 138 LKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGR 197
Query: 433 NIIHGSDSVESAKKEIGLWFTDKEV 507
NIIHGSD E+AK EI LWF +E+
Sbjct: 198 NIIHGSDGPETAKDEISLWFKPEEL 222
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/55 (60%), Positives = 43/55 (78%)
Frame = +2
Query: 89 MAEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD 253
+A + ERTFI +KPDGVQRGL+ II RFE+KG+KLVG+K + PS+ Q+HY D
Sbjct: 83 LAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHD 137
>At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3,
mitochondrial (NDK3) identical to Nucleoside diphosphate
kinase III, mitochondrial precursor (NDK III) (NDP
kinase III) (NDPK III) (SP:O49203) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain;
Length = 238
Score = 119 bits (287), Expect = 1e-27
Identities = 52/85 (61%), Positives = 66/85 (77%)
Frame = +1
Query: 253 LASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGR 432
L RPFF GL ++SSGPV+ MVWEG V++ GR+++GAT+P S+PGTIRGDL + VGR
Sbjct: 139 LKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGR 198
Query: 433 NIIHGSDSVESAKKEIGLWFTDKEV 507
NIIHGSD E+AK EI LWF +E+
Sbjct: 199 NIIHGSDGPETAKDEISLWFKPQEL 223
Score = 81.0 bits (191), Expect = 6e-16
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +2
Query: 86 MMAEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD 253
++A + ERTFI +KPDGVQRGL+ II RFE+KGFKLVG+K + PS++ Q+HY D
Sbjct: 83 VLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHD 138
>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
chloroplast (NDPK2) identical to SP|O64903 Nucleoside
diphosphate kinase II, chloroplast precursor (NDK II)
(NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain; contains Pfam profile
PF00334: Nucleoside diphosphate kinase
Length = 231
Score = 119 bits (286), Expect = 2e-27
Identities = 48/85 (56%), Positives = 69/85 (81%)
Frame = +1
Query: 253 LASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGR 432
L+++ FFP L++Y++SGPVV M WEG+ VV + R+++G T+P ++PGTIRGDL +Q GR
Sbjct: 134 LSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGR 193
Query: 433 NIIHGSDSVESAKKEIGLWFTDKEV 507
NI+HGSDS E+ K+EIGLWF + E+
Sbjct: 194 NIVHGSDSPENGKREIGLWFKEGEL 218
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/53 (66%), Positives = 41/53 (77%)
Frame = +2
Query: 95 EQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD 253
E E T+IMVKPDG+QRGLVG II RFEKKGFKL+GLK +EL ++HY D
Sbjct: 81 EDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKD 133
>At1g17410.1 68414.m02126 nucleoside diphosphate kinase family
protein contains Pfam PF00334 : Nucleoside diphosphate
kinase domain; similar to Nucleoside diphosphate kinase
homolog 5 (NDK-H 5) (NDP kinase homolog 5) (nm23-H5)
(Testis-specific nm23 homolog) (Inhibitor of p53-induced
apoptosis-beta) (IPIA-beta) (SP:P56597) {Homo sapiens}
Length = 181
Score = 69.3 bits (162), Expect = 2e-12
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Frame = +1
Query: 223 RRTSPATLQRLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPAD---SQP 393
+ T+ A + +SR FFP LV YM+SGPV+ MV E N V R ++G T+ S P
Sbjct: 73 KETASAFYEEHSSRSFFPHLVTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHP 132
Query: 394 GTIRGDLCIQVGRNIIHGSDSVESAKKEIGLWFTD 498
+IR +N +HGSDS SA++EI +F D
Sbjct: 133 HSIRALCGKNSQKNCVHGSDSTSSAEREIKFFFKD 167
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 92 AEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLV 199
A ERT M+KPDGV I + GF +V
Sbjct: 29 ASSEERTLAMIKPDGVSGNYTEEIKTIVVEAGFNIV 64
>At3g47450.2 68416.m05160 expressed protein
Length = 561
Score = 30.7 bits (66), Expect = 0.86
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -3
Query: 488 QRPISFLADSTLSEPWMMLRPT*MQRS--PRIVPGCESAGLVAPSI*RPVFTTLRPSHTI 315
+RP S +A S L W+ + P R PR + E + S+ +PV LRP+ I
Sbjct: 478 KRPASDVAISGLG--WISIEPIRKTRGTEPRDLNEAEHEIHICVSVPKPVEVFLRPTLPI 535
Query: 314 GTTGPE 297
GT+G E
Sbjct: 536 GTSGTE 541
>At3g47450.1 68416.m05159 expressed protein
Length = 561
Score = 30.7 bits (66), Expect = 0.86
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -3
Query: 488 QRPISFLADSTLSEPWMMLRPT*MQRS--PRIVPGCESAGLVAPSI*RPVFTTLRPSHTI 315
+RP S +A S L W+ + P R PR + E + S+ +PV LRP+ I
Sbjct: 478 KRPASDVAISGLG--WISIEPIRKTRGTEPRDLNEAEHEIHICVSVPKPVEVFLRPTLPI 535
Query: 314 GTTGPE 297
GT+G E
Sbjct: 536 GTSGTE 541
>At5g67430.1 68418.m08502 GCN5-related N-acetyltransferase (GNAT)
family protein contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 386
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 552 KFTHKPSFHLQVSS-PNFFVRKPEAYF-LFSR-FNAVRTMDDVTPNLNAEITADSAGLRV 382
+ PSFH+ V+ N V + +R NA+R DDV+P +N A +GLRV
Sbjct: 45 RIRQSPSFHMLVAEIGNEIVGMIRGTIKMVTRGVNALRQADDVSPEINTTKLAFVSGLRV 104
Query: 381 S 379
S
Sbjct: 105 S 105
>At5g51480.1 68418.m06385 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase;
similar to pollen-specific protein
Length = 592
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = -1
Query: 286 LLDQGRKAGMPIAVVLLEKFF*WPYEFQTD*FEAFLFETFNNGAHKTTLYTIRL-NHNKS 110
+LD G++ GMP V++ K P+++ + + ET N KT Y IR+ N S
Sbjct: 179 ILDSGKELGMPDGVLINGK---GPFKYNSSVPDGIEHETVNVDPGKT--YRIRVHNVGIS 233
Query: 109 TLTLFR--HHEILL 74
T FR +H++LL
Sbjct: 234 TSLNFRIQNHKLLL 247
>At5g12260.1 68418.m01441 expressed protein
Length = 624
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 98 QRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDWHP 262
QRE+T I+V G + + ++ FEK + F+ PS EL HP
Sbjct: 387 QREKTIILVSLYGADKMFIRNLLCHFEK--LNIQNHIFIGPSSELFHDLSRRGHP 439
>At3g51650.1 68416.m05664 expressed protein
Length = 826
Score = 28.7 bits (61), Expect = 3.5
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 VFICRCPAPTSLSVNQRPISFLADSTLSEPWMMLRPT*MQRSP-RIVPGCESAGLVAPSI 357
+F PAP S +VN + ST +P + + Q S R S GL +P
Sbjct: 494 LFARSTPAPVSSNVN----TISRPSTNPQPNVQISQVPSQVSSIRTFDNSISFGLPSPFT 549
Query: 356 *RPVFTTLRPSHTIGTTGPELMYFTRPGKKGRDANRCSVAGEVLLM 219
PV+++ + ++G + P F +PG+ R + C V + L+
Sbjct: 550 -IPVYSSGSTTSSLGFSPPTEFVFPQPGEDERFEDPCYVPDPISLL 594
>At4g22980.1 68417.m03316 expressed protein ; expression supported
by MPSS
Length = 559
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 152 VGTIIERFEKKGFKLVGLKFVWPSEELLQQ 241
V +I EKKG K +F WPS E+L +
Sbjct: 205 VEEMIRISEKKGIKPQSAEFSWPSTEILSE 234
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 160 GAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSINYTC 50
GA Y++R+ KS ++ H E TC I +TC
Sbjct: 139 GAAADRHYSMRMRDLKSKKAIYIHREAPATCLIWFTC 175
>At3g61390.1 68416.m06871 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 373
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 160 GAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSINYTC 50
GA Y++R+ KS ++ H E TC I +TC
Sbjct: 139 GAAADRHYSMRMRDLKSKKAIYIHREAPATCLIWFTC 175
>At2g26960.1 68415.m03234 myb family transcription factor (MYB81)
contains PFAM profile: myb DNA binding domain PF00249;
identical to cDNA putative transcription factor (MYB81)
mRNA, partial cds GI:3941513
Length = 427
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 513 WTPANENWVYE*IYFNLYILSCSHNLC*TF-CD*MRHFHKK 632
+TPANEN + + LY L H LC F + H H K
Sbjct: 368 FTPANENITGKTCFLTLYALHALHCLCNQFKKSPLLHLHDK 408
>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 217 PYEFQTD*FEAFLFETFNN-GAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 62
P F + ++ +F +F+ KT L IRL N++ +T+F +I+ + +I
Sbjct: 4 PSSFSSQNYKFNVFASFHGPDVRKTLLSHIRLQFNRNGITMFDDQKIVRSATI 56
>At1g60790.1 68414.m06843 expressed protein
Length = 541
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 184 FLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILL 74
F+ E+ G + TTL T+RL+ T +++R +IL+
Sbjct: 324 FVRESSFKGVNGTTLETLRLDMMDKTTSMYRDADILI 360
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,754,773
Number of Sequences: 28952
Number of extensions: 277629
Number of successful extensions: 710
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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