Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00263
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    24   1.5  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   1.5  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   3.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.4  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    22   4.5  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   5.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.8  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 17/76 (22%), Positives = 31/76 (40%)
 Frame = -3

Query: 609 PIPKLDMRPDAQTGHLHTKILGRNSTGKPGHRAPYTSFALQAHGIHERAGARMGCETFST 430
           P+      PD++ G+    ++G +    PG  A  T  +L  +           C   ST
Sbjct: 138 PVRPAACTPDSRVGYGSVGLVGGDPASSPGAAAGRTGNSLSWNN---------PCSINST 188

Query: 429 MTHPCLTEVTYSTHHS 382
            + P  T++   T+H+
Sbjct: 189 SSQPVGTQIHQQTNHT 204


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 548 LAETAPENPATVLHTPLSHSKHTASMRGQVHAWDVRHFLP*HTHASQKSHIAPTI 384
           L +T+P   +   +T  S S  + S+    H  D  +++    H S  S  +PTI
Sbjct: 151 LTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPNYIKPQLHVSTGSTSSPTI 205


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 648 YSCLRCKTCFCEEHVRRRGVRSADGEPP 731
           Y C  CK  F +     + +R   GE P
Sbjct: 78  YRCRLCKKAFSDSSTLTKHLRIHSGEKP 105


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 648 YSCLRCKTCFCEEHVRRRGVRSADGEPP 731
           Y C  CK  F +     + +R   GE P
Sbjct: 334 YRCRLCKKAFSDSSTLTKHLRIHSGEKP 361


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 167 RAAREHVDLAQH-PCNVAMECDKCQKKQK 250
           R + + ++L ++ P  +  +C KC +KQK
Sbjct: 57  RCSPDGLELKKNMPDAIETDCSKCSEKQK 85


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 170 PVFLSGATSVSLLFYVDRSFSLACSC 93
           P  +S  + VSL+F  + +  + C C
Sbjct: 234 PFLISNISLVSLIFLFNCTLIIMCDC 259


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/44 (27%), Positives = 14/44 (31%)
 Frame = +3

Query: 543 CQGFLCEDDQFEHQASCQVLESETYKCQSCNRIGQYSCLRCKTC 674
           C    CED    H+  C    S +Y     N      C    TC
Sbjct: 156 CNNGTCEDIGNSHRCHCSDGYSGSYCQTEINECDSAPCQNGGTC 199



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/49 (18%), Positives = 20/49 (40%)
 Frame = +3

Query: 477 CRVLGVRKRCMEHGGRVFRCCFCQGFLCEDDQFEHQASCQVLESETYKC 623
           C  +    +C    G   + C   G+ C+ +  ++   C++ +   Y C
Sbjct: 353 CTTIHAGHKCTCPEGFYGKNCEFSGYDCDSNPCQNGGVCRISDGGGYIC 401


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 648 YSCLRCKTCFCEEHVRRRGVRSADGEPP 731
           ++C  C   F  +HV +   R+  GE P
Sbjct: 135 FTCEVCNRSFGYKHVLQNHERTHTGEKP 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,224
Number of Sequences: 336
Number of extensions: 4690
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)