Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00263
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.30
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 29 0.91
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 28 1.6
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 27 2.8
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 26 4.8
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 26 6.4
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 26 6.4
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 6.4
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.5
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 25 8.5
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 418 WVCHGRKCLTSHACTCPLMDAVCLECERGVWSTVAGFSGAVSAKDFC 558
++C G CL T P VC +C R +S+ + SG VS C
Sbjct: 17 FICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSES--SGKVSPSRCC 61
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 28.7 bits (61), Expect = 0.91
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 573 FEHQASCQVLESETYKCQSCNRIGQYSCLRCKTCF 677
FEH + L S + C +C +I + C CF
Sbjct: 46 FEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCF 80
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 487 LECERGVWSTVAGFSGAVSAKDFCVKMTSLS-IRPHVKFWNRKPTSVNHVTALGSTRVSA 663
L+C+ +S SGAVS V ++SLS + + KP S ++V G R+S+
Sbjct: 457 LKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMP---HKPASQSNV---GPVRISS 510
Query: 664 AKRASVRSTCGGAACGPLTASRP 732
+R+ S+ + L A P
Sbjct: 511 NRRSRKFSSSSRVSVSNLLAGSP 533
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 27.1 bits (57), Expect = 2.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 621 CQSCNRIGQYSCLRCKTCFCEE 686
C C G+Y+C C T +C +
Sbjct: 102 CNVCGYWGKYACQNCGTSYCSK 123
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 312 PTVSTCWESLYSLTEVAKCSVFC 244
P+VST W L+ L ++ +C C
Sbjct: 42 PSVSTLWRLLFELQKMIECEPSC 64
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Frame = -3
Query: 459 ARMGCETFSTMTHPCLTEV--TY--STH 388
A CET T+ HPC+ + TY STH
Sbjct: 65 ADRACETMKTLRHPCIIKYLSTYKSSTH 92
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 209 YRDVELNLHVRERPVFLSGATSV 141
YRDV+L+L E+PV L T V
Sbjct: 378 YRDVDLSLETDEKPVKLMVRTEV 400
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 462 GARMGCETFSTMTHPCLTEVTYSTHHSH 379
G C+ FS + HPC + + H H
Sbjct: 175 GTVSSCDDFSYLVHPCRVRFSQWSKHLH 202
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 373 TGMGMVGAICDFCEAWVCHGRKCLTSHACTCPLMDAVCLECE-RGVWSTVAGFSG 534
T + M + F A+ + ++C C CPL+ + LE E V S+ G +G
Sbjct: 162 TSLSMKSSKYSFLTAFFKYPQQCYKGPGCVCPLL--IDLESEDADVLSSTPGSAG 214
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 338 EIVLLDIQVFTTREWEWWVLYVTSVRHGCVMVENVSHPMRAPAL 469
EIV++ + T R W + S+ V VENV HP +P L
Sbjct: 47 EIVIVMSDIGTERRWN-----LQSLPWQHVTVENVQHPASSPNL 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,333,756
Number of Sequences: 5004
Number of extensions: 73822
Number of successful extensions: 237
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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