Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00263
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1228 - 25009736-25010965 35 0.058
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 33 0.24
01_06_1640 + 38836977-38836988,38837694-38838047,38838164-388382... 31 1.3
10_04_0005 + 7390697-7390705,7390943-7391096,7391225-7391424,739... 29 2.9
08_01_0608 - 5339541-5340177,5340555-5340877 29 2.9
11_04_0350 - 16658497-16659015 29 5.1
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 29 5.1
02_03_0415 + 18805541-18805610,18805962-18806128,18806616-188066... 29 5.1
12_02_1004 + 25202732-25202783,25202997-25203181,25203269-252035... 28 6.7
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 28 6.7
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 28 6.7
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083... 28 6.7
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 28 6.7
01_01_0102 + 769442-770159,770710-770805,771340-771363,771470-77... 28 6.7
08_01_0047 - 328895-329404,329492-329821,330253-330626,330712-33... 28 8.8
05_07_0251 - 28677293-28677748,28677891-28678217 28 8.8
04_01_0014 - 231228-233179,233522-233714 28 8.8
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 28 8.8
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701... 28 8.8
01_06_0099 - 26421441-26421716,26422318-26422527 28 8.8
01_03_0082 - 12280109-12281068 28 8.8
>07_03_1228 - 25009736-25010965
Length = 409
Score = 35.1 bits (77), Expect = 0.058
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 576 EHQASCQVLESETYKCQSCNRIGQYSCLRCKTCFCEEHVRRRGV 707
EHQ + L++ + C+ C + G +C RCK+C HV GV
Sbjct: 12 EHQLTRTKLKNP-FNCKVCTKPGDTTCYRCKSCKFSIHVNCAGV 54
>08_02_0864 +
21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +1
Query: 262 CYFCQA----VQRLPTCAHCGKVKCMLKSGDCVIRHPGVYNTGMGMVGAICDFC 411
CY C A + R C HCG+V C + + V R PG G +C++C
Sbjct: 70 CYDCDAQFTILNRRHHCRHCGRVFCARCTANSVPRAPGDAAREDGERIRVCNYC 123
>01_06_1640 +
38836977-38836988,38837694-38838047,38838164-38838294,
38838554-38838860,38839036-38839349,38839507-38839645
Length = 418
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +3
Query: 456 VHLPSHGCRVLGVRKRCMEHGGRVFRCCFCQGFLCEDDQFEHQASCQVLESETYKCQSCN 635
+H+ GCR +G R + ++ V R C+G + H ++C++ C +C
Sbjct: 294 IHICRDGCRTIGPRDQTLKSSQAVCRFPACKGI---ELLLRHFSACKM--RVPGGCANCK 348
Query: 636 RIGQYSCLRCKTC 674
RI Q L + C
Sbjct: 349 RIWQLLELHSRMC 361
>10_04_0005 +
7390697-7390705,7390943-7391096,7391225-7391424,
7391649-7391739,7392042-7392385
Length = 265
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2
Query: 128 KKAEKQKLRQKEIRAAREHVDLAQH-PCNVAMECDKCQKK--QKTLHFATSVKLYRDSQH 298
K++ K++ +K+ AA+E D Q V M C+ C KK + L F + DS+
Sbjct: 6 KESVKEEQAEKKEEAAKEKPDEPQEIVLKVDMHCEGCAKKVEKSLLRFEGVENVKADSRS 65
Query: 299 VLTVGKSNA 325
V KS A
Sbjct: 66 KTVVVKSRA 74
>08_01_0608 - 5339541-5340177,5340555-5340877
Length = 319
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 655 VSAAKRASVRSTCGGAACGPLT-ASRP 732
++A A++RS CGG CG T ASRP
Sbjct: 242 LAAVDVAALRSKCGGVKCGGFTPASRP 268
>11_04_0350 - 16658497-16659015
Length = 172
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 95 KNMPKKKTGQRKKAEKQKLRQKEIRAAREHV 187
K KKK ++KK +K+K ++K++R +E +
Sbjct: 32 KKKKKKKKKKKKKKKKKKKKKKKVRYTQEQI 62
>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 577 SNWSSSHKNPWQKQHRKTRPPCSIHLFRTPSTRHP*EGR 461
S W + H TRPP +++TPST+ P GR
Sbjct: 1260 STWEREDELKSAHPHLFTRPPDGEIIWQTPSTKGPISGR 1298
>02_03_0415 +
18805541-18805610,18805962-18806128,18806616-18806645,
18807459-18807515,18808268-18808337,18808915-18810998
Length = 825
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 525 PGHRAPYTSFALQAHGIHER--AGARMGCETFSTMTHP 418
PG R+PYTS L HG AG +MG + S + P
Sbjct: 213 PGGRSPYTSQGLTRHGSIPSLGAGLQMGSPSMSLPSSP 250
>12_02_1004 +
25202732-25202783,25202997-25203181,25203269-25203509,
25203617-25204022,25204618-25204795,25204875-25205387
Length = 524
Score = 28.3 bits (60), Expect = 6.7
Identities = 25/97 (25%), Positives = 38/97 (39%)
Frame = +1
Query: 343 CVIRHPGVYNTGMGMVGAICDFCEAWVCHGRKCLTSHACTCPLMDAVCLECERGVWSTVA 522
C I H V N G+ + A D+ + + LT A LM +W+
Sbjct: 234 CCIIHNWVVNDGIDELIAPPDWSSEDI---DESLTGQANDHALMVQFRQGLADQMWADRN 290
Query: 523 GFSGAVSAKDFCVKMTSLSIRPHVKFWNRKPTSVNHV 633
G + F +T I+ H+K W RK T +N +
Sbjct: 291 SHHGMAVNERFNSTLTGEQIKNHLKTWQRKFTKINRL 327
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 50 NGESNCVRCYICK*NKNMPKKKTGQRKKAEKQKL-RQKEIRAAREHV 187
+G + + Y+ K +N+ KK+ K +K+K +KEIR RE +
Sbjct: 183 SGTIDLMALYLTKKYENLTKKRNEDLAKLKKEKEDMEKEIRGLRERI 229
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 86 K*NKNMPKKKTGQRKKAEKQKLRQKEIRAAREHVDLAQH 202
K K KKK ++KK +K+K ++K+ + R + AQH
Sbjct: 78 KKKKKKKKKKKNKKKKKKKKKKKKKKKKKKRWPSNKAQH 116
>01_06_1580 -
38406740-38407257,38407481-38407552,38408309-38408365,
38408476-38408532,38408643-38408699,38408809-38408865,
38409371-38409424,38409744-38409800,38410023-38410076,
38412208-38412220,38413530-38413580,38414134-38414193,
38414640-38414761,38415033-38415894,38416468-38416667,
38417159-38417238,38417525-38417619
Length = 821
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 609 ETYKCQSCNRIGQYSCLRC 665
E +KC SC R +Y CL C
Sbjct: 59 ELHKCVSCKRNSEYHCLCC 77
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 125 RKKAEKQKLRQKEIRAAREHVDLA 196
+K+ E+ K R+ + RAA EH DLA
Sbjct: 667 KKRKEEMKAREAQSRAAAEHGDLA 690
>01_01_0102 +
769442-770159,770710-770805,771340-771363,771470-772542
Length = 636
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 478 AVCLECERGVWSTVAGFSGAVSAKDFCVKMTSLSIRP 588
++C +CER VW TV G + V++ ++SIRP
Sbjct: 231 SICQQCEREVWITVGGTT---------VRVVTISIRP 258
>08_01_0047 -
328895-329404,329492-329821,330253-330626,330712-330937,
331026-331475
Length = 629
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 553 FCVKMTSLSIRPHVKFWNRKPTSVNHV 633
FC T I+ H+K W +K T +N +
Sbjct: 407 FCTNFTGDQIKNHLKTWQKKFTKMNRL 433
>05_07_0251 - 28677293-28677748,28677891-28678217
Length = 260
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 553 FCVKMTSLSIRPHVKFWNRKPTSVNHV 633
FC T I+ H+K W +K T +N +
Sbjct: 56 FCTNFTGDQIKNHLKTWQKKFTKMNRL 82
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 87 NKTRTCQRKRPVNVKKQRNRSCARKKYGPLANM*I*LNIPVTLLWSATNVRKNRRHCILL 266
++T C R P++ NR+ + + P+A+ + L + AT K C
Sbjct: 244 DRTGGCSRNTPLDCTISGNRTSSADMFHPIAH--VKLPYDSESIQDATTQSK----CAQA 297
Query: 267 LLSSCTETP-----NMCSLWESQM 323
LSSC+ T N+CS+W +
Sbjct: 298 CLSSCSCTAYSYQNNICSVWHGDL 321
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +3
Query: 579 HQASCQVLESETYKCQSCNRIGQYSCLRCKTCFCEEH 689
H + TY C C+ +G RCK C + H
Sbjct: 522 HDHELVLTRCTTYGCDGCDEMGDSWSYRCKECDFDLH 558
>01_07_0344 -
42869465-42869502,42869597-42869771,42869923-42870117,
42870678-42870788,42870899-42871111,42871551-42871658,
42871732-42871873,42872150-42873449,42874032-42874085,
42874491-42874923
Length = 922
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 483 HGIHERAGARMGCETFSTMTHPCLTEVTYSTHHSHSRVVNTWMSNN 346
+G+H GA G + S PCL E + HS++ ++ + +S +
Sbjct: 208 YGLHRETGAISGLHSDSKA--PCLPENQNESSHSYASIIGSSLSRS 251
>01_06_0099 - 26421441-26421716,26422318-26422527
Length = 161
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 125 RKKAEKQKLRQKEIRAAREHVDLA 196
+K+ E+ K R+ + RAA EH DLA
Sbjct: 122 KKRKEEMKAREAKSRAAAEHGDLA 145
>01_03_0082 - 12280109-12281068
Length = 319
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/58 (20%), Positives = 26/58 (44%)
Frame = +2
Query: 350 LDIQVFTTREWEWWVLYVTSVRHGCVMVENVSHPMRAPALSWMPCAWSAKEVYGARWP 523
L++QVF++ + EW ++ C + + + A+ W+ S + +WP
Sbjct: 95 LNVQVFSSDDGEWGPPLACAIPTDCELHSHAKPVVLRGAVHWLCLTHSRHRILVLKWP 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,814,495
Number of Sequences: 37544
Number of extensions: 524938
Number of successful extensions: 1833
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1770
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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