Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00263
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g01480.1 68418.m00061 DC1 domain-containing protein contains ... 31 0.79
At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/PO... 31 1.0
At3g07660.1 68416.m00918 expressed protein 30 1.4
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/PO... 30 1.4
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 30 1.8
At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger) fa... 29 4.2
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 28 5.6
At3g21300.1 68416.m02691 RNA methyltransferase family protein co... 28 5.6
At2g44500.1 68415.m05533 expressed protein contains Pfam PF03138... 28 5.6
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ... 28 5.6
At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa... 28 7.4
At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein ... 28 7.4
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ... 28 7.4
At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ... 27 9.8
At1g43722.1 68414.m05024 hypothetical protein 27 9.8
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 27 9.8
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 27 9.8
At1g09920.1 68414.m01116 TRAF-type zinc finger-related contains ... 27 9.8
>At5g01480.1 68418.m00061 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 413
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 459 HLPSHGCRVLGVRKRCMEHGGRVFRCCFCQGFL 557
H SH C+ R+ +HGG V+RC C F+
Sbjct: 330 HDESHHCQAC--RRPSYDHGGNVYRCMQCDDFI 360
>At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/POZ
domain-containing protein contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
similar to Speckle-type POZ protein (SP:O43791) [Homo
sapiens]
Length = 368
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/80 (28%), Positives = 32/80 (40%)
Frame = +3
Query: 456 VHLPSHGCRVLGVRKRCMEHGGRVFRCCFCQGFLCEDDQFEHQASCQVLESETYKCQSCN 635
VH+ GCR +G K H F+ C G + +H A C+ L S C C
Sbjct: 246 VHICRDGCREIGPTKTETPHMSCGFQA--CNGL---EQLLKHLAGCK-LRSIPGGCSRCK 299
Query: 636 RIGQYSCLRCKTCFCEEHVR 695
R+ Q L + C E +
Sbjct: 300 RMWQLLELHSRICVDSEQCK 319
>At3g07660.1 68416.m00918 expressed protein
Length = 841
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -3
Query: 525 PGHRAPYTSFALQAHGIH-ERAGARMGCETFSTMTHPCLTEVTYSTHH 385
PG P + + LQ HG H A A+ G F M HP HH
Sbjct: 758 PGRDVPSSFYGLQHHGQHVTYAPAQAGHVAFPGMYHPGQAVTATGVHH 805
>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
family protein contains a Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 688
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +3
Query: 588 SCQVLESETYKCQS--CNRIGQYSCLRC 665
SC++ S T C CN GQY C RC
Sbjct: 553 SCKIAISRTGGCNKMVCNNCGQYFCYRC 580
>At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/POZ
domain-containing protein contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
similar to p300/CBP acetyltransferase-related protein
(GI:12597461) [Arabidopsis thaliana]; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 364
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +3
Query: 456 VHLPSHGCRVLGVRKRCMEHGGRVFRCCFCQGFLCEDDQFEHQASCQVLESETYKCQSCN 635
VH+ GC +G R + ++ V + C+G + H C+ S C C
Sbjct: 245 VHICREGCGTIGPRDKALKGSHTVCKFPACKGL---EGALRHFLGCKSRAS----CSHCK 297
Query: 636 RIGQYSCLRCKTCFCEE 686
R+ Q L+ +C C++
Sbjct: 298 RMWQ--LLQLHSCICDD 312
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 555 LCEDDQFEHQASCQVLESETYKCQSCNRIGQYSCLRCKT 671
LC + E + CQ+ + ++Y +C C RC T
Sbjct: 479 LCIASELEKKVRCQICKGKSYSKLNCMECDYIICFRCAT 517
>At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 348
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 540 FCQGFLCEDDQFEHQASCQVLESETYKCQSCNRIGQYSCLRCK 668
+C C E + S E E +C C + GQ C++CK
Sbjct: 186 YCPNSRCSALMSETELSISTKEDEVRRC--CFKCGQIFCIKCK 226
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 92 NKNMPKKKTGQRKKAEKQKLRQKEIRAAREHVDLAQHPCNVAMECDKCQKKQK 250
N+ + KKK +R + E +KL+Q + +H D N ++ + +KK+K
Sbjct: 13 NEEIKKKKHKKRARDEAKKLKQPAMEEEPDHEDGDAKENNALIDEEPKKKKKK 65
>At3g21300.1 68416.m02691 RNA methyltransferase family protein
contains TIGRfam TIGR00479: RNA methyltransferase, TrmA
family
Length = 554
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 161 EIRAAREHVDLAQHPCNVAMECDKCQKKQKTLHFATSVKLYRDSQHVLT--VGK-SNAC* 331
+++ H DL + PC A C C K + L + ++ + H L VG+ S+
Sbjct: 124 KMKTISPHKDLVEAPCEYASYCGGC--KTQNLSYEAQLRAKEEQVHELIRHVGRFSDNNP 181
Query: 332 SLEIVLLDI 358
LEIVL I
Sbjct: 182 GLEIVLKPI 190
>At2g44500.1 68415.m05533 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as 'axi
1 protein from Nicotiana tabacum -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 573
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 92 NKNMPKKKTGQR-KKAEKQKLRQKEIRAAREHVDLAQHPCNVAMECDKCQKKQKT 253
N ++P+ + K ++ L Q E+R ++ D+ +HP M D+ Q++Q++
Sbjct: 517 NSSLPESDFNRIVKDLHRESLGQPELRMSKAGKDVTKHPVPECMCSDRQQQEQQS 571
>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
Pfam profilePF03107: DC1 domain
Length = 569
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +3
Query: 543 CQGFLCEDDQFEHQASCQVL---ESETYKCQSCNRIGQYSCL 659
C+ EDD E+ C+ L Y C+ C+ +G C+
Sbjct: 307 CKRVREEDDSLEYCGVCETLIHAGHHVYSCEECDFLGHIECI 348
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 441 SHIPCVHLPSHGCRVLGVRKRCMEHGGRVFRCCFCQGFLCED-DQFEHQASCQVLESETY 617
S + C+ SH ++ V EH GR C C G + D + H C+ LE +
Sbjct: 229 SFLRCLMHESHEHKLFYVSSNAKEHFGRNNCCQICLGAVVSSLDSYYHCIECE-LEFH-F 286
Query: 618 KCQSCNR-IGQYSC 656
+C ++ I + SC
Sbjct: 287 ECLGISKTISKRSC 300
>At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 872
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 531 RCCFCQGFLCEDDQFEHQASCQVLESETYKCQSCNRIGQYSCLRCKTCF 677
+CC +GFL EDD +C + + C CN + + C CF
Sbjct: 782 KCCGGEGFLSEDDSVR---TCLLADKGDNDC--CNDVEASNKSLCAICF 825
>At2g26940.1 68415.m03231 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 286
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +2
Query: 32 CFLMISNGES--NCVRCYICK*NKNMPKKKTGQRKKAEKQKLRQKEIRAARE-HVDLAQH 202
C S+G++ VR + + N KK + K +K+K + ++ +E +DLA+
Sbjct: 54 CEKQFSSGKAYGGHVRIHSIEYNNKGKMKKMKKMKLKKKKKRKIGLVKKEKEKEIDLART 113
Query: 203 PCNVAMECDKCQKKQKTLH 259
+ C C K+ +T+H
Sbjct: 114 DVEGKIRCCLCGKEFQTMH 132
>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 530
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 534 CCFCQGFLCEDDQFEHQASCQVLESETYKCQSCNRIGQYSCL 659
C C+G + E+ + E+ + E YKC C+ CL
Sbjct: 419 CDICEGKIEEEKEKEYNWDDRERELRFYKCNDCSTALHVDCL 460
>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 709
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 603 ESETYKCQSCNRIGQYSCLRCKTC 674
E+ET K +S N + CL C TC
Sbjct: 158 ENETLKTESQNIQSNFQCLFCSTC 181
>At1g43722.1 68414.m05024 hypothetical protein
Length = 324
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 487 LECERGVWSTVAGFSGAVSAKDFCVKMTSLSIRPHVK--FWNRKPTSVNHVTAL 642
L+ ++ W +GF GA+ CVK ++P ++ +WNR + ++ A+
Sbjct: 163 LQVDQRYWPYFSGFVGAMDGTHVCVK-----VKPDLQGMYWNRHDNASLNIMAI 211
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 539 TAPENPATVLHTPL-SHSKHTASMRGQVHAWDVRHF 435
T N T LH +HS +AS+ G V AWD + +
Sbjct: 388 TEHTNAVTALHFMADNHSLLSASLDGTVRAWDFKRY 423
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 539 TAPENPATVLHTPL-SHSKHTASMRGQVHAWDVRHF 435
T N T LH +HS +AS+ G V AWD + +
Sbjct: 428 TEHTNAVTALHFMADNHSLLSASLDGTVRAWDFKRY 463
>At1g09920.1 68414.m01116 TRAF-type zinc finger-related contains
Pfam PF02176: TRAF-type zinc finger; similar to TNF
receptor associated factor 4 (GI:7274404) [Mus musculus]
(GI:7274404); similar to Cysteine rich motif Associated
to Ring and Traf domains protein (mCART1)(GI:1041446)
[Mus musculus]
Length = 192
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +3
Query: 522 RVFRCCFCQGFLCEDDQFEHQASCQVLESETYKCQSCNRIGQYSCLRCKTCFCEEHVRRR 701
R+ C FC+ L D EHQ C Y+C S R+ + K C RR
Sbjct: 86 RIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYQCNSYVRLRERYNHETK-CPGTVESSRR 144
Query: 702 GVRSADGE 725
R+A+G+
Sbjct: 145 IPRAAEGD 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,733
Number of Sequences: 28952
Number of extensions: 410223
Number of successful extensions: 1522
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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