Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00262
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    26   4.1  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    26   5.4  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    25   7.2  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.5  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   9.5  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   9.5  

>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +1

Query: 466 LSSMYMASFCMLLIEYFCNASNLFHFFPSVLSQAAIHFL 582
           L + Y++S  ++L+E +C   +L+H+     S  ++ F+
Sbjct: 170 LLNYYVSSAELILVENYCMGGDLYHYTKKHHSDFSLEFV 208



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 512 YSISSIQKEAMYILESGSRVPYAMYT 435
           + +++IQK+++Y L+ G    YA+Y+
Sbjct: 69  FGLTNIQKKSLYSLQLGRSRGYALYS 94


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 443 WRKAHDFHFQVCTWPLFVCCL 505
           WRKA      V TW LF+ CL
Sbjct: 153 WRKASYGLLGVFTWGLFIICL 173


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -1

Query: 646 DIMQRLTNDFITADFRQMKVNVKNG*PLVIV----RLERNETDWTHCKNTQ*AAYKKRPC 479
           +I ++ T  F   DF+   +   N  PL+      +L + + DW + ++   A+ ++RP 
Sbjct: 286 EIPKKRTRSFRKGDFKVSVLKETND-PLLAPNYEKKLSQRKRDWINRQSVPRASKRRRPL 344

Query: 478 TY 473
           TY
Sbjct: 345 TY 346


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 490 FCMLLIEYFCNASNLF--HFFPSVLSQAAIHFLR*LS 594
           F  L  + F   +N F  H FP  +++ ++HF++ LS
Sbjct: 137 FYTLSFDTFSTHTNFFPRHTFPIFIARVSLHFVKQLS 173


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 515 FAMRPICFISFQAYYHKRLSIFYV 586
           F ++ ICF+ F AY+     +FY+
Sbjct: 271 FTLKRICFVQFFAYFGWFPFLFYI 294


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 512 YSISSIQKEAMYILESGSRVPYAMYT 435
           + + + QKEA+Y LE G  V  A +T
Sbjct: 279 FELDNFQKEAIYHLEMGDSVFVAAHT 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,519
Number of Sequences: 5004
Number of extensions: 36530
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)