Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00262
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.12 
SB_30157| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-40)                 31   1.1  
SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 142 HCFINKHLHAIGRAKVTVRKRYPAHPY 222
           HC    H+H  G  K++ RK+   HPY
Sbjct: 241 HCSTTSHMHLKGHVKISTRKKTDGHPY 267


>SB_30157| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-40)
          Length = 312

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +2

Query: 467 FQVCTWPLFVCCLLSIFAMRPICFISFQAYYHKRLSI---FYVDFHLSEICSNKII 625
           F VC  P F+  +LS++     CF +FQ Y    L+I   F     +   C N +I
Sbjct: 198 FVVCWLPFFIIVVLSLWCKPEDCFAAFQKYPKFSLAIRIPFVFVLPMVNSCINPVI 253


>SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 84  PLDYGSIYAHK*KQIQ--RTLTLFHKQTLARDWSRQ 185
           P DYGS+YA K  + +  +T T  +++ L R  S Q
Sbjct: 18  PCDYGSVYARKYSEFKDDQTWTSMYEKNLGRKVSEQ 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,902,903
Number of Sequences: 59808
Number of extensions: 268210
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)