Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00262
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24190.1 68414.m03051 paired amphipathic helix repeat-contain...    28   6.2  
At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repe...    27   8.2  
At2g46320.3 68415.m05763 mitochondrial substrate carrier family ...    27   8.2  
At2g46320.2 68415.m05762 mitochondrial substrate carrier family ...    27   8.2  
At2g46320.1 68415.m05761 mitochondrial substrate carrier family ...    27   8.2  
At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl...    27   8.2  

>At1g24190.1 68414.m03051 paired amphipathic helix repeat-containing
           protein similar to transcription co-repressor Sin3
           [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1353

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 640 MQRLTNDFITADFRQMKVNVKNG*PLVIVRLERNETDWTHCKN 512
           ++RL  D        +K NV    P+++ RL++ + +W  C++
Sbjct: 564 IERLYGDHGLDVMDVLKKNVSLALPVILTRLKQKQEEWARCRS 606


>At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repeat
            (PF00400); 42% similarity to fimbriae-associated protein
            Fap1 (gi:3929312) [Streptococcus parasanguinis]
          Length = 994

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 513  FLQCVQSVSFLSKRTITSGYPFFTLTFICRKSAVIKSFVNRCI 641
            F+   Q   F + R IT  + FF L FI  + +V     N C+
Sbjct: 945  FVAVQQRGIFFTSRCITINFLFFVLHFIKEQGSVSFQLYNNCL 987


>At2g46320.3 68415.m05763 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 262

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 72  AFKCPLDYGSIYAHK*KQIQRTLTLFHKQTLARDWSRQG 188
           A  CPLD         K   R +T+  +QTLA  W   G
Sbjct: 185 AATCPLDVAKTRRQIEKNTDRAMTMTTRQTLAEIWRDGG 223


>At2g46320.2 68415.m05762 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 262

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 72  AFKCPLDYGSIYAHK*KQIQRTLTLFHKQTLARDWSRQG 188
           A  CPLD         K   R +T+  +QTLA  W   G
Sbjct: 185 AATCPLDVAKTRRQIEKNTDRAMTMTTRQTLAEIWRDGG 223


>At2g46320.1 68415.m05761 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 361

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 72  AFKCPLDYGSIYAHK*KQIQRTLTLFHKQTLARDWSRQG 188
           A  CPLD         K   R +T+  +QTLA  W   G
Sbjct: 284 AATCPLDVAKTRRQIEKNTDRAMTMTTRQTLAEIWRDGG 322


>At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl
           CoA:diacylglycerol acyltransferase (DGAT) identical to
           gi:5050913, gi:6625553
          Length = 520

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = +2

Query: 443 WRKAHDFHFQ---VCTWPLFVCCL-LSIFAM 523
           W    DF F    +  WPLF+CC+ LSIF +
Sbjct: 160 WLIRTDFWFSSRSLRDWPLFMCCISLSIFPL 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,819,525
Number of Sequences: 28952
Number of extensions: 176155
Number of successful extensions: 371
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)