Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00260
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    28   1.6  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   4.8  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   4.8  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   4.8  

>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 2   LTEKFTEVLAWCRSDRAILK 61
           L ++  EVL+WC   RAILK
Sbjct: 166 LQQELKEVLSWCSEHRAILK 185


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +1

Query: 145 NPGGNFST*NSTLSPFSPLPIRFSLRGYSSYARTGRWLTGSI*ENLLT 288
           N GG F+  +S     SPL        Y S    G WL GS+  N  T
Sbjct: 146 NGGGAFNAFDSRFESDSPLSGLLQSAMYISGLSGGSWLVGSVAINNFT 193


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 168 LKFNTLPFFPPTYSL*PKGLFQLRADG*VAHGLNLREFAN 287
           ++ N +PF   T  L PK +FQ   +G +   + L+E  N
Sbjct: 325 IQTNVVPFLYLTLDLPPKPIFQDEFEGNIIPQVELKEILN 364


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +1

Query: 145 NPGGNFST*NSTLSPFSPLPIRFSLRGYSSYARTGRWLTGSI*ENLLT 288
           N GG F+  +S     SPL        Y S    G WL GS+  N  T
Sbjct: 146 NGGGAFNAFDSRFESDSPLSGLLQSAMYISGLSGGSWLVGSVAINNFT 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,786
Number of Sequences: 5004
Number of extensions: 57648
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)