Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00260
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246...    29   3.8  
01_06_0355 + 28657833-28660665,28660762-28661126                       29   3.8  

>05_01_0315 -
           2468267-2468293,2469021-2469070,2469159-2469234,
           2469498-2469575,2469967-2470048,2470146-2470238,
           2470564-2470673,2470831-2470893,2471293-2471344,
           2471421-2471545,2472681-2472794,2472917-2472961,
           2473278-2473337,2474725-2474778,2474944-2474992,
           2475071-2475252,2475349-2475404,2475491-2475584
          Length = 469

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +1

Query: 469 YSDVIVLAV----VEYSTTKSVGTEM*KCRTAQM*ILCYWIFSLISKDNCLFTIVLFRQR 636
           YS V VL V    +E+         M +C+       CY+   ++S D  +  + LF +R
Sbjct: 123 YSIVKVLEVAYLSIEHMFVDVHNKHMQRCQVCYSGKTCYFALQVLSLDISVSYLPLFMER 182

Query: 637 RALGDIKYLLAIDNLYLNH 693
             +GD KY L     YL +
Sbjct: 183 ALIGD-KYTLLTYLCYLTY 200


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 172 NSTLSPFSPLPIRFSLRGYSSYARTGRWLTGSI*E--NLLTLAIVRAVLRRFSGRILIAI 345
           N+ L+   P+ + + L+        G  LTGS+ E  NL     +     RFSG +  ++
Sbjct: 567 NNQLTSAVPMGL-WGLQNIVGLDLAGNALTGSLPEVENLKATTFMNLSSNRFSGNLPASL 625

Query: 346 HLFTLTTFVWLLY 384
            LF+  T++ L Y
Sbjct: 626 ELFSTLTYLDLSY 638


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,035,807
Number of Sequences: 37544
Number of extensions: 354387
Number of successful extensions: 636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)