Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00260
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z69663-1|CAA93511.1|  636|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    28   5.9  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      28   5.9  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      28   5.9  

>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 555 LRGPTFLHFSTHRFSCTILYDSEYDNITIGLSLILQSAVS--FMRGP-DGVRSHKA 397
           LRGPT     +  F+      S+YD   +G S IL+   +     GP DG+ ++KA
Sbjct: 280 LRGPTNTEMFSGPFNGQTTNKSDYDQKQVGRSEILKGPANTEMFSGPFDGITTNKA 335


>Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical
           protein F28H7.6 protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 153 TWVTFIGNNTTKIDSTKFSNYELCIIQNKN--HFR 55
           ++ TF G+    ++  K  N E+C+IQN    HFR
Sbjct: 188 SFTTFTGDRRKLLELKKACNPEMCVIQNDEECHFR 222


>Z69663-1|CAA93511.1|  636|Caenorhabditis elegans Hypothetical
           protein K02B9.1 protein.
          Length = 636

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 153 TWVTFIGNNTTKIDSTKFSNYELCIIQNKNHF 58
           +WV F GN +   D    SN+     Q  NHF
Sbjct: 70  SWVCFSGNTSLADDPNVLSNFSALAQQRVNHF 101


>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 192 KRGEC*ISS*EVATWVTFIGNNTTKIDSTKFSNYELCIIQNKNHFRIALSLLHHASTSVN 13
           K  E  +SS   + W +FIG   + +DS   S  E  + Q K+    A SL  + S  + 
Sbjct: 409 KAEESPVSSGSSSIWPSFIGQYPSILDSASLSVLEKALDQQKSSEDDASSLCSNESKLLK 468

Query: 12  F 10
           F
Sbjct: 469 F 469


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 192 KRGEC*ISS*EVATWVTFIGNNTTKIDSTKFSNYELCIIQNKNHFRIALSLLHHASTSVN 13
           K  E  +SS   + W +FIG   + +DS   S  E  + Q K+    A SL  + S  + 
Sbjct: 409 KAEESPVSSGSSSIWPSFIGQYPSILDSASLSVLEKALDQQKSSEDDASSLCSNESKLLK 468

Query: 12  F 10
           F
Sbjct: 469 F 469


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 192 KRGEC*ISS*EVATWVTFIGNNTTKIDSTKFSNYELCIIQNKNHFRIALSLLHHASTSVN 13
           K  E  +SS   + W +FIG   + +DS   S  E  + Q K+    A SL  + S  + 
Sbjct: 409 KAEESPVSSGSSSIWPSFIGQYPSILDSASLSVLEKALDQQKSSEDDASSLCSNESKLLK 468

Query: 12  F 10
           F
Sbjct: 469 F 469


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,748,633
Number of Sequences: 27780
Number of extensions: 320341
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)