Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00259
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0878 + 29039110-29039366,29039634-29039822,29039907-290400... 34 0.091
09_06_0096 - 20840855-20841994 31 0.64
03_05_1131 - 30606808-30607042,30607141-30607664 31 0.84
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 30 1.5
12_01_0965 + 9688062-9688532 30 2.0
08_01_1016 - 10280918-10281171,10281319-10281460 29 2.6
04_03_0173 + 12248973-12249809 29 3.4
11_06_0344 + 22540436-22540737,22541304-22543545 29 4.5
03_06_0297 - 32924162-32924605 29 4.5
03_05_0783 - 27662178-27662237,27662659-27662700,27662791-276628... 29 4.5
03_06_0395 + 33616304-33616494,33616863-33617095,33617213-336173... 28 6.0
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 28 7.9
10_07_0042 - 12298536-12298589,12298704-12298810,12298850-122988... 28 7.9
05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033 28 7.9
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 7.9
>04_04_0878 +
29039110-29039366,29039634-29039822,29039907-29040044,
29040786-29041011,29041686-29041878,29041963-29042123
Length = 387
Score = 34.3 bits (75), Expect = 0.091
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 214 DRYARVCVRVLSGRKYSGVSVRLTCEDGTVRPHRVATPA-RCHCAACGPGLTKHPKPGHA 390
D Y VC+ L G++ SG R E R V P + HC ACG GL KHP+ G
Sbjct: 318 DSYVPVCMVSLEGKEKSG-GYR-DIEVDYPRGGFVGVPVDKNHCYACGDGL-KHPEDGTL 374
Query: 391 SYSG 402
SG
Sbjct: 375 YESG 378
>09_06_0096 - 20840855-20841994
Length = 379
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 82 PELRHCRSDPHPDGSPRPVRQQVPHH 159
P +R R PHPDG+P P VPHH
Sbjct: 306 PVVRRRRPTPHPDGAPPP----VPHH 327
>03_05_1131 - 30606808-30607042,30607141-30607664
Length = 252
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 37 QRETASPQ*MRP*EHPELRHCRSDPHPDGSPRPVRQQVPHHRLHGVPRLL 186
+R A+ P H R S P P +PRPVR V + ++G RLL
Sbjct: 11 KRHRAAAAAAAPASHSHQRERTSIPAPAAAPRPVRIYVVFYSMYGHVRLL 60
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -3
Query: 189 SQEPWHSVKPVMGNLLTHR----PWAPIGMRIRPTVSELGML 76
+ +PW ++P++GN++ R W P +R + S+ G +
Sbjct: 299 TDDPWRDLQPIVGNIMIPRDGSKSWLPESLRAKKDTSDRGQV 340
>12_01_0965 + 9688062-9688532
Length = 156
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 496 RVVVSPRFPRSAGIYPGSRT-PCPAPAVLGSWY 401
+ +++ P GIYP T PC P V G WY
Sbjct: 124 QAMLALNMPSICGIYPSYNTAPCSIPTVGGIWY 156
>08_01_1016 - 10280918-10281171,10281319-10281460
Length = 131
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/53 (37%), Positives = 22/53 (41%)
Frame = -3
Query: 408 LGTRVGCVTRFRVLSESGSAGGTVAARRRGDPVRSDRPVFARESHGHAAVLPA 250
LG V R + + GSAG AA G V RP R AA LPA
Sbjct: 60 LGHEVKVPKRMAIAHKGGSAGAAAAAGAGGGGVSESRP---RNGKNGAATLPA 109
>04_03_0173 + 12248973-12249809
Length = 278
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 214 LVVIDSSRVAGAVALREAGDGELVDAQAVGSHRDADQTYSV*ARDAL 74
++V+D + +L EA GE+V Q + + D + YS+ A+ AL
Sbjct: 65 VLVVDDAAAGAITSLPEATQGEVVALQVLLDYYDPVKLYSLKAKTAL 111
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 106 DPHPDGSPRPVRQQVPHHRLHGVPRLLRLWNYL*QPDRYARVCVRVLSGRKYSGVSVRLT 285
D P+ +P+ +R H R VPR + N+L + RVC G K G RL
Sbjct: 625 DFSPEDAPQNLRHVAMHARFLTVPRWIAGLNHL--SSLHIRVCKLAPEGVKILGRLHRLE 682
Query: 286 C 288
C
Sbjct: 683 C 683
>03_06_0297 - 32924162-32924605
Length = 147
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = -1
Query: 371 CLVSPGPQAAQWQRAGVATRCGRTVPSSHVSRTDTPL 261
CL P AA +RA V RCG T P + V TD L
Sbjct: 23 CLHRPQVGAAAARRAAVGVRCGGT-PPAEVPGTDRSL 58
>03_05_0783 -
27662178-27662237,27662659-27662700,27662791-27662892,
27662991-27663147,27663230-27663307,27663391-27663446,
27663557-27663634,27663736-27663867,27663943-27664078,
27664252-27664403,27665317-27665391,27665476-27665535,
27665865-27665944,27666392-27666462,27666549-27666689,
27667467-27667555,27668657-27668731,27669303-27669401,
27669526-27669572,27669654-27669875,27671485-27671557,
27671650-27671823
Length = 732
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 393 LLWYQEPSTAGAGQGVRDPGYIPALRGKRG 482
L W + P+ GAG G PG +PA G
Sbjct: 4 LAWTRLPTADGAGAGAEGPGPVPASPSSAG 33
>03_06_0395 +
33616304-33616494,33616863-33617095,33617213-33617303,
33617882-33617930,33618123-33618214,33618285-33618398,
33618473-33619172,33619269-33619336,33619626-33619760,
33619862-33620079,33620169-33620593
Length = 771
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -2
Query: 259 TSGLTTLARRLVRTGLVVIDSSRVAGAVALREAGDGELVDAQAVGSHRDADQTYSV*ARD 80
T +T RLV G ++ VA +AL A LVD VG+ D ++ V
Sbjct: 4 TPRITVAEGRLVAHGRTILTG--VADNIALTHASGAGLVDGAFVGATADEPKSLHVFTFG 61
Query: 79 ALRD 68
LRD
Sbjct: 62 TLRD 65
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -1
Query: 380 GLGCLVSPGPQAAQWQRAGVAT---RCGRTVPS 291
G GC + P P+ R+GVA R GRTV S
Sbjct: 114 GAGCAIRPRPRCGPRARSGVAAQQWRHGRTVAS 146
>10_07_0042 -
12298536-12298589,12298704-12298810,12298850-12298861,
12299554-12300511
Length = 376
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 161 GFTECHGSCDSGTIYNNQTGTHESACECCQAGSTA 265
GFT C S IYN + T E + QA S+A
Sbjct: 167 GFTNCRKSISKAEIYNPEADTWEPLPDLRQAHSSA 201
>05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033
Length = 143
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 372 P*TWSRILLWYQEPSTAGAGQG 437
P TWS+ W++ T+GAG+G
Sbjct: 70 PVTWSKEKTWWKSLGTSGAGKG 91
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 498 LESWFLLASPEALEYIRDHVLP 433
L S+F + P+ E+ +DHVLP
Sbjct: 2279 LVSYFAIREPQKAEFYKDHVLP 2300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,386,392
Number of Sequences: 37544
Number of extensions: 471063
Number of successful extensions: 1833
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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