Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00259
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1201| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_31379| Best HMM Match : Pou (HMM E-Value=0) 31 1.1
SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26) 30 1.5
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 30 1.5
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0) 30 2.0
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 2.0
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042) 29 4.6
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43) 29 4.6
SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_1201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 31.5 bits (68), Expect = 0.65
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 94 HCRSDPHPDGSPRPVRQQVPHHRLHGVPRLLRL-W-NYL*QPDRYARVCVRVLSGRK 258
+C+ +GSP P Q HR RL RL W N + Q RYAR +LSG K
Sbjct: 4 YCKVYHQSNGSPLPHAVQTLRHRDQLKTRLCRLRWANRVRQKMRYARGSTVILSGGK 60
>SB_31379| Best HMM Match : Pou (HMM E-Value=0)
Length = 310
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 423 GAGQGVRDPGYIPALRGKRGETTTLITSRFDN 518
G GQ R+P +IP++RG G T + FD+
Sbjct: 31 GGGQ-FREPSWIPSIRGSNGSIPTSVFDSFDD 61
>SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26)
Length = 555
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 211 PDRYARVCVRVLSGRKYSGVSVRLTCEDGTVRPHRVATPARCHC 342
P RY+ V R + ++T DGT RPH+ A + C
Sbjct: 64 PQRYSSAAVWRSMNRVFKPFYTQMTPVDGTTRPHKQAEEQQSQC 107
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +2
Query: 35 CNEKPQALSKCVPKSIPSSDTVGLIRIPMGAHGLCVNKFPITGFTECHGSCDSGTIYNNQ 214
C K KC+ K S ++ I P+G++ C P G + H +C +GT
Sbjct: 470 CASKSADPVKCLAKQYAPSGSLACIDCPVGSY--C----PTDGLS-YHITCANGTY---T 519
Query: 215 TGTHESACECCQAGSTAACP 274
T +++ C C AGS CP
Sbjct: 520 TAVNQTECATCPAGS--KCP 537
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = +2
Query: 185 CDSGTIYNNQTGTHESACECCQAG--------STAACPCDSRAKTGRSDRTGSPRRRAAT 340
C +GT Y+N G +++C+ CQAG S AC + +K G T P +
Sbjct: 415 CTNGT-YSN--GQRQTSCQTCQAGYRCGSGAKSETACGDGTYSKEGSDTCTECPAGHSCA 471
Query: 341 VPPADP 358
ADP
Sbjct: 472 SKSADP 477
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 135 RPWAPIGMRIRPTVSELGML 76
RPW+P+G RI PT++ L
Sbjct: 361 RPWSPVGQRIPPTITPFDKL 380
>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2195
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 158 TGFTECHGSCDSGTIYNNQTGTH 226
T FTEC SC +GT + N+T T+
Sbjct: 333 TNFTECTVSCGNGTKFRNRTCTN 355
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 158 TGFTECHGSCDSGTIYNNQTGTH 226
+ FTEC SC +GTI N+T T+
Sbjct: 215 SSFTECTKSCGNGTITRNRTCTN 237
>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1576
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 296 GRSDRTGSPRRRAATVPPADPDSLSTLNLVTHP 394
G +D GSP +++T PP P SLST++ P
Sbjct: 807 GSNDFIGSPTAKSST-PPVPPASLSTISTTPQP 838
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 200 IYNNQTGTHESACECCQAGSTAACPCDSRAKTGRSDRTGSPRRRAATVPPA 352
+Y+ G H S + G C C +KT S PRR+ +T+ A
Sbjct: 3489 VYHGMDGVHFSPWKYNSGGMVTQCSCLLDSKTNVSPMKPLPRRQQSTITTA 3539
>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +2
Query: 170 ECH-GSCDSGTIYNNQTGTHESACECCQAGSTAACPCDSRAKTGRSDR-TGSPR 325
EC C +G + N+ G + AC+ G C S K +DR G PR
Sbjct: 502 ECSVNPCKNGGVCKNEHGGYSCACKAGFTGKNCEQECRSYKKLDTADRAAGRPR 555
>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +1
Query: 64 MRP*EHPELRHCRSDPHPDGSPRPVRQQVPH--HRLHGVP 177
M P HP LRH P SP P PH HR H P
Sbjct: 1 MPPVPHPLLRHHPPPPASSSSPTPCYGITPHPLHRHHLPP 40
>SB_30851| Best HMM Match : C2 (HMM E-Value=0.0042)
Length = 889
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 349 CGPGLTKHPKPGHASYSGTKNPVQP 423
C PG K KPG ++ GT P+ P
Sbjct: 650 CAPGGRKLGKPGRSASMGTPRPIDP 674
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 265 GVSVRLTCEDGTVRPHRVATPARCHCAACGPG 360
G + L+CE G+ +P+R + +C CGPG
Sbjct: 2530 GTNAPLSCEPGSYQPNR----GQGNCTKCGPG 2557
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 185 CDSGTIYNNQTGTHE-SACECCQAGSTAA 268
C GT +NN TG SAC+ C AGS A
Sbjct: 2282 CQPGT-FNNLTGQPSVSACKLCPAGSYCA 2309
>SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43)
Length = 1602
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 2 ADIVNTTCCQICNEKPQALSKCVPKSIPSSDT 97
A + CQ C +K ++KC+ K+ SS+T
Sbjct: 641 ASVKKEATCQYCKKKGHIVAKCLKKAKKSSET 672
>SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Frame = +2
Query: 77 SIPSSDTVGLIRIPMGAHGLCVNKFPITGFTECHGSCDSGTIYNNQTG-----THESACE 241
++P+S + + +G C N F T T C DS T+ TG T +S
Sbjct: 441 TVPTSSVSSRPTVAVTLNGGC-NNFTTTSLTTCSAILDSATVAKLGTGPTCSWTSKSTLV 499
Query: 242 CCQAGSTAACPCDSRAKTGR 301
S P DS GR
Sbjct: 500 ITTGTSATIMPSDSLTLEGR 519
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 119 MGAHGLCVNKFPITGFTECHG 181
+G+ G C+ F FTECHG
Sbjct: 1594 LGSSGSCLESFRPNPFTECHG 1614
>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 70 P*EHPELRHCRSDPHPDGSPRPVRQQVPHHRL 165
P HP LR C P P P VPHH L
Sbjct: 836 PVPHPLLRPCAPPPATALCPTPCYGPVPHHLL 867
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Frame = +1
Query: 259 YSGVSVRLTCEDGTVRPHRVATPA-------RCHCAACGPGLTKHPKPGHASYSGT 405
Y G+ VR T +G RP R P HC +++ PG + Y+ +
Sbjct: 2771 YEGLEVRKTVSEGVARPPRRRKPTARSIRWKELHCNTSSSSSSQNTSPGTSPYTSS 2826
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,880,037
Number of Sequences: 59808
Number of extensions: 503831
Number of successful extensions: 1631
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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