Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00259
(680 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42230.2 68415.m05226 tubulin-specific chaperone C-related we... 31 0.93
At2g42230.1 68415.m05227 tubulin-specific chaperone C-related we... 31 0.93
At5g66430.1 68418.m08378 S-adenosyl-L-methionine:carboxyl methyl... 29 2.2
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 29 2.2
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit... 29 3.8
At1g03220.1 68414.m00300 extracellular dermal glycoprotein, puta... 29 3.8
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 5.0
At2g36350.1 68415.m04461 protein kinase, putative similar to pro... 28 6.6
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 28 6.6
At5g25090.1 68418.m02973 plastocyanin-like domain-containing pro... 27 8.7
At4g32920.1 68417.m04685 glycine-rich protein 27 8.7
>At2g42230.2 68415.m05226 tubulin-specific chaperone C-related weak
similarity to Tubulin-specific chaperone C
(Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
[Homo sapiens]
Length = 568
Score = 30.7 bits (66), Expect = 0.93
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 344 PPADPDSLSTLNLVTHPTLVP 406
PP DPD + NL+ HP VP
Sbjct: 10 PPPDPDPIQNSNLIIHPRRVP 30
>At2g42230.1 68415.m05227 tubulin-specific chaperone C-related weak
similarity to Tubulin-specific chaperone C
(Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
[Homo sapiens]
Length = 562
Score = 30.7 bits (66), Expect = 0.93
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 344 PPADPDSLSTLNLVTHPTLVP 406
PP DPD + NL+ HP VP
Sbjct: 10 PPPDPDPIQNSNLIIHPRRVP 30
>At5g66430.1 68418.m08378 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to
SAM:salicylic acid carboxyl methyltransferase (SAMT)
[GI:6002712][Clarkia breweri] and to SAM:benzoic acid
carboxyl methyltransferase
(BAMT)[GI:9789277][Antirrhinum majus]
Length = 354
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 2 ADIVNT--TCCQICNEKPQALSKCVPKSIPSSD 94
A+IVNT CQ CN+KP + C+ +P +D
Sbjct: 63 AEIVNTINVLCQQCNQKPPEIDCCL-NDLPDND 94
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 284 RAKTGRSDRTGSPRRRAATVPPAD 355
R K G DR GSP RR + PAD
Sbjct: 148 RGKEGEMDRFGSPNRRRTSGEPAD 171
>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 894
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 227 ESACECCQAGSTAACPCDSRAKTGRSDRTGSPRRRAATVPPADPDSLSTLNLVTHPTLVP 406
E E +AG +++ P DS A + S R+ A VP PD L L + + +VP
Sbjct: 596 EDFAEGSEAGYSSSNPVDSAASPPGNIPQPSGRQPAPAVPAPVPDLLGDLMGLDNAAIVP 655
>At1g03220.1 68414.m00300 extracellular dermal glycoprotein,
putative / EDGP, putative similar to extracellular
dermal glycoprotein EDGP precursor [Daucus carota]
GI:285741
Length = 433
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 161 GFTECHGSCDSGTIYNNQTGTHESACECCQAGSTAACPCDSRAKTGRSDRT 313
G E CD G + + ++ C +AGST+ C S + G S+ T
Sbjct: 64 GGRELWVDCDKGYVSSTYQSPRCNSAVCSRAGSTSCGTCFSPPRPGCSNNT 114
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 37 QRETASPQ*MRP*EHPELRHCRSDPHPDGSPRPVRQQVP 153
Q+E+ PQ +P + P+ P P+ SP+P + Q+P
Sbjct: 457 QKESPKPQPSKPEDSPK----PEQPKPEESPKPEQPQIP 491
>At2g36350.1 68415.m04461 protein kinase, putative similar to
protein kinase KIPK (KCBP-interacting protein kinase)
[Arabidopsis thaliana] gi|7716430|gb|AAF68383
Length = 949
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 331 RCHCAACGPGLTKHPKPGHASYSGTKNPVQPERDRE 438
+CHCA HP P + S++ KN V E D+E
Sbjct: 400 KCHCAVKSTSTENHP-PSNTSHTTDKN-VSIEADQE 433
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +2
Query: 212 QTGTHESACECCQAGSTAACPCDSRAKTGRSDRTGSPRRRAATVPPADPDSLSTLNLVTH 391
+TG E +C CQ SRA+ P + T+PP L LNL
Sbjct: 42 KTGVVEFSCPTCQLPQMLPPELLSRARPQFPQSPQQPPQPIQTLPPPIQQQLKPLNLPRP 101
Query: 392 P 394
P
Sbjct: 102 P 102
>At5g25090.1 68418.m02973 plastocyanin-like domain-containing
protein
Length = 186
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 493 VVVSPRFPRSAGIYPGSR-TPCPAPAVLGS 407
VV+S R + G + GS +P P+PA+LG+
Sbjct: 125 VVMSSRGGHTGGFFTGSSPSPAPSPALLGA 154
>At4g32920.1 68417.m04685 glycine-rich protein
Length = 1432
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 98 VGLIRIPMGAHGLCVNKFPITGFTECH-GSCDSGTIYNNQTGTHESACECCQA 253
+G+I +G +G K G C SGT Y N TG+ ++ C C A
Sbjct: 776 MGIIEDNIGGNGTLTGKACPEGLYGLFCEECPSGT-YKNVTGSDKALCHLCPA 827
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,853,471
Number of Sequences: 28952
Number of extensions: 331412
Number of successful extensions: 985
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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