Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00258
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   1.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.9  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 11  STKRSATGPTWVARSPTGSRCATKTTATP 97
           S  R+ T PT V  S      A ++ ATP
Sbjct: 193 SASRTTTSPTKVKASKASPAAAPRSVATP 221


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 25  SNGPDMGRKIPNRIPVRDENDCDTRAYIKDDSVKIVTL 138
           SN    G +  N IPV  +      AY++ D + I TL
Sbjct: 130 SNLTVSGLRCVNGIPVSSKTLASQSAYVQQDDLFIGTL 167


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 25  SNGPDMGRKIPNRIPVRDENDCDTRAYIKDDSVKIVTL 138
           SN    G +  N IPV  +      AY++ D + I TL
Sbjct: 130 SNLTVSGLRCVNGIPVSSKTLASQSAYVQQDDLFIGTL 167


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -1

Query: 509 LRFSCAQESV-DQLLDHKTDVIILQ*LRD---SHCLVVVPGRHALEKQIHKKL 363
           LRF+  +E++  Q +    + ++ + LR    S C+ V   R+ LEK++ ++L
Sbjct: 196 LRFTTRKETIYKQSIVDMGEFLLYRLLRCWLISKCIYVFNPRYYLEKKVTRRL 248


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -1

Query: 509 LRFSCAQESV-DQLLDHKTDVIILQ*LRD---SHCLVVVPGRHALEKQIHKKL 363
           LRF+  +E++  Q +    + ++ + LR    S C+ V   R+ LEK++ ++L
Sbjct: 196 LRFTTRKETIYKQSIVDMGEFLLYRLLRCWLISKCIYVFNPRYYLEKKVTRRL 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,351
Number of Sequences: 336
Number of extensions: 3312
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)