Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00258
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0545 - 18673640-18674249,18674579-18674934 35 0.079
06_03_0784 - 24557089-24557198,24557296-24560725 33 0.32
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 32 0.42
12_01_0622 + 5124213-5125292,5126820-5128685 30 2.2
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 30 2.2
06_03_1214 + 28469848-28473048 29 3.0
12_01_0343 + 2640822-2641106,2641488-2641556,2641708-2641887,264... 29 5.2
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605... 28 6.9
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 28 9.1
01_01_0012 + 71903-72935,73468-73981,74619-76008 28 9.1
>10_08_0545 - 18673640-18674249,18674579-18674934
Length = 321
Score = 34.7 bits (76), Expect = 0.079
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = -1
Query: 533 TTCPRMRTLRFSCAQESVDQLLDHKTDVIILQ*LRDSHCL---VVVPGRHALEKQIHKKL 363
T P+++ L C++ ++ LL ++ L+ L SHCL +V GR + ++ +
Sbjct: 193 THLPKLKVLSLRCSKVTMSALLWLLDNMANLEVLNISHCLLFEIVANGRRQVIHELDDQT 252
Query: 362 LVEESHVR-VHHCR 324
L + S +R HHC+
Sbjct: 253 LQKASRLREFHHCQ 266
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 204 AHAFVNDSRNVSGAVRNDGRAHERHYFDRVILD-VSPGVAVVFVAHRDPVGDLATH 40
AH F+ D R+ G++++ GR++ R + G V +V H D + DLA H
Sbjct: 470 AHEFIQDGRHTYGSLKSTGRSYFDELLSRSFFQALQYGGTVHYVMH-DLMNDLAVH 524
>06_03_0783 -
24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 32.3 bits (70), Expect = 0.42
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 204 AHAFVNDSRNVSGAVRNDGRAHERHYFDRVILD-VSPGVAVVFVAHRDPVGDLATH 40
AH F+ D + G++R+ GR++ F R + G V +V H D + DLA H
Sbjct: 505 AHEFIQDHGHTYGSLRSTGRSYFDELFSRSFFQALQYGGTVHYVMH-DLMNDLAFH 559
>12_01_0622 + 5124213-5125292,5126820-5128685
Length = 981
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -3
Query: 306 AARSRDSTAEACSLARQQELNTLRLYRHAVYDDHAH 199
AAR R + A +ELN LRL H V DDH H
Sbjct: 119 AARGRIADRIRELKASVEELNQLRLRYHIVVDDHHH 154
>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 204 AHAFVNDSRNVSGAVRNDGRAHERHYFDRVILDVSP-GVAVVFVAHRDPVGDLATHV 37
A FV+ RN++ ++ + GR + R V G + ++ H D + DLA HV
Sbjct: 1338 AQGFVHSDRNINTSLEDIGRGYFNDLLQRSFFQVFRCGDQIYYIMH-DVLNDLALHV 1393
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 204 AHAFVNDSRNVSGAVRNDGRAHERHYFDRVILD-VSPGVAVVFVAHRDPVGDLATHV 37
AH F+ D G++ + G+++ R + G V +V H D + DLA HV
Sbjct: 470 AHEFIQDRGRTYGSLTSTGKSYFDELLSRSFFQALRYGGTVHYVMH-DLMNDLAVHV 525
>06_03_1214 + 28469848-28473048
Length = 1066
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -1
Query: 224 MPYMTTMPTRSLTILVMSLALFGMMGALMSVTILTESSLM*ARVSQSFSSRTGILLGILR 45
+P ++ T + T +S+A F L+ + +L+ +S + Q SS G L G+L
Sbjct: 6 LPCSSSSSTTTTTTTKLSVAFF----RLLVILLLSFASPTSSCTEQEESSLIGFLEGLLP 61
Query: 44 PMSGPLLTSW 15
+G L TSW
Sbjct: 62 GHNGSLSTSW 71
>12_01_0343 +
2640822-2641106,2641488-2641556,2641708-2641887,
2642015-2642081,2643237-2644015
Length = 459
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 154 IPNSARDITRIVNERVGMVVIYGMPVESQGIKLLLPS 264
I N+ +DIT + VG V+I G P Q I PS
Sbjct: 269 IVNNGKDITMKFHGEVGQVIIAGKPYRFQAIHWHAPS 305
>08_02_1340 -
26256768-26256999,26258105-26258774,26259273-26260555,
26262403-26263499
Length = 1093
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 31 GPDMGRKIPNRIPVRDENDCDTRAYIKD 114
GP G +P+R P++D DC+ A I+D
Sbjct: 420 GPSRGGCVPSRNPLKDPGDCEAVA-IRD 446
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 252 PAAELKSKLLLYCPDYELPDYLQEPTMMDS 341
PA LK++ YC +YEL LQE + +S
Sbjct: 942 PAKHLKTEKRKYCSNYELDYNLQEMRLSES 971
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 18 RGQQRARHGSQDPQQDPGARRKRLRHPGLHQG*LGQNSDAHERAHHSEQRQR 173
R +R R S P + + R R PG H+G + + R HHS +R R
Sbjct: 620 RSPKRHREESLSPSKSRRSARAGSRSPGQHKG----SKLSPTRDHHSSRRSR 667
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,462,426
Number of Sequences: 37544
Number of extensions: 388173
Number of successful extensions: 1270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -