Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00258
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)                  31   0.99 
SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)
          Length = 563

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 390 CVSTGDYDKAVTITKSLQDDNVGFMIE 470
           C+S GD+++A++I K++  DN G + E
Sbjct: 313 CISAGDHERALSILKTIAKDNKGTLPE 339


>SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 33  ARHGSQDPQQDPGARRKRLRHPGLH-QG*LGQNSDAHERAHHSEQRQR 173
           ARHGSQD  QDPG +      PG H  G    N++ + R  H  +R+R
Sbjct: 595 ARHGSQDQAQDPGDQ------PGAHPSGQFLFNAECYHR--HCSRRRR 634


>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 94  TRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 210
           T    KDDSV  V    + I+P S++ +T  V E  G V
Sbjct: 206 TTTETKDDSVTDVNTKKSAILPESSQAVTDQVEENDGSV 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,498,804
Number of Sequences: 59808
Number of extensions: 455877
Number of successful extensions: 1277
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)