Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00258
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04450.1 68414.m00437 p21-rho-binding domain-containing prote...    32   0.46 
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    31   1.1  
At5g64250.2 68418.m08072 2-nitropropane dioxygenase family / NPD...    30   1.9  
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil...    29   4.3  
At5g38150.1 68418.m04598 expressed protein                             28   5.7  
At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727 ...    28   5.7  
At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containi...    28   5.7  
At1g23010.1 68414.m02875 multi-copper oxidase type I family prot...    28   7.6  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    27   10.0 

>At1g04450.1 68414.m00437 p21-rho-binding domain-containing protein
           contains Pfam PF00786: P21-Rho-binding domain
          Length = 220

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 3   EPTVPRGQQRARHGSQDPQQDPGARRKRL 89
           +P   R   R+RHGS D   DP  RR+R+
Sbjct: 124 QPKNTRRHHRSRHGSIDSSNDPSVRRRRV 152


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 273 KLLLYCPDYELPDYLQEPTMMDSHVAFLNKQLLMDLLFKCVSTGD 407
           +L LYC  Y  P+++  P      +  L +++  D   KC  TGD
Sbjct: 438 QLDLYCAKYPPPEFIDIPETHHHKLTLLKERIEFDCDAKCGETGD 482


>At5g64250.2 68418.m08072 2-nitropropane dioxygenase family / NPD
           family contains Pfam profile PF03060: oxidoreductase,
           2-nitropropane dioxygenase (NPD) family
          Length = 333

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 279 LLYCPDYELPDYLQE 323
           LL CPD+E PDYL+E
Sbjct: 37  LLRCPDWECPDYLRE 51


>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
           to U2 small nuclear ribonucleoprotein auxiliary factor
           35 kD subunit related protein 1 (sp|Q15695)
          Length = 757

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 18  RGQQRARHGSQDPQQDPGARRKRLRHPGLHQG*LGQNSDAHERAHHSEQRQRH 176
           R +QR R+ S DP+ D   + KR            Q+ +  +R  H E+R RH
Sbjct: 687 RSKQRQRYKSDDPESDQSRKGKR------------QSEENSDRETHKERRHRH 727


>At5g38150.1 68418.m04598 expressed protein
          Length = 574

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 64  IPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERV 201
           I  RDE  C  +  +++D VKI  L S  +I  S  ++  I  ER+
Sbjct: 294 IRARDETACLGKI-LREDDVKIEKLNSKILIEKSKLEVVSIAEERI 338


>At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727
           myosin heavy chain PCR43 [Arabidopsis thaliana]
          Length = 556

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -2

Query: 736 DKLPAHSVTSLVLAVSPGQAVVVRVDIGVQLQSLIVISSDDFHPFLLGDQFDFRREKVID 557
           +K   HSV+S V+A      V++  D    + S  ++  DD  PF +GD  +   +  ++
Sbjct: 474 EKYGTHSVSSDVIA---NMRVMMTEDSNNAVSSSFLLDEDDSIPFTVGDITESMEQVNVN 530

Query: 556 YIVVSGGPQLVR 521
            I +   PQL+R
Sbjct: 531 DIEL---PQLIR 539


>At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 857

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -2

Query: 736 DKLPAHSVT-SLVLAVSPGQAVVVRVDIGVQLQSLIVISSDDF 611
           D++  ++VT   VL+V   + ++   D+GVQL  L+V+S  DF
Sbjct: 233 DQISPNAVTFDCVLSVCASKLLI---DLGVQLHGLVVVSGVDF 272


>At1g23010.1 68414.m02875 multi-copper oxidase type I family protein
           similar to SP|P07788 Spore coat protein A {Bacillus
           subtilis}; contains Pfam profile PF00394: Multicopper
           oxidase
          Length = 581

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 700 LAVSPGQAVVVRVDIGVQLQSLIVISSDDFHPFLLGDQFDFRREKVIDYIV 548
           + +SP + V V VD        +V+++D  +P+  GD  +    KV+ +I+
Sbjct: 334 ILLSPSEIVDVVVDFYKSPSRTVVLANDAPYPYPSGDPVNEENGKVMKFII 384


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -2

Query: 100 PGCRSRFRRAPGSC-WGSCDPCRARC 26
           P CR    + P  C +G+C PCR  C
Sbjct: 492 PLCRHGQNQKPHKCHYGACPPCRLLC 517


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,458
Number of Sequences: 28952
Number of extensions: 297165
Number of successful extensions: 866
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)