Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00257X
(402 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 158 3e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 75 5e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 73 2e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 68 5e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 64 1e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 50 2e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 40 1e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 38 4e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 4.4
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 25 5.8
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 5.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 5.8
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 24 7.7
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 24 7.7
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit... 24 7.7
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 24 7.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 24 7.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 158 bits (383), Expect = 3e-40
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = +1
Query: 1 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILA 180
DIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSV IGGSILA
Sbjct: 288 DIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILA 347
Query: 181 SLYTFQQMWISKQEYDESGPSIVHR 255
SL TFQQMWISKQEYDESGP IV+R
Sbjct: 348 SLSTFQQMWISKQEYDESGPGIVYR 372
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 74.5 bits (175), Expect = 5e-15
Identities = 36/85 (42%), Positives = 54/85 (63%)
Frame = +1
Query: 1 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILA 180
D+R LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ +GGSILA
Sbjct: 293 DLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILA 352
Query: 181 SLYTFQQMWISKQEYDESGPSIVHR 255
SL TF+++ I+ +EY I R
Sbjct: 353 SLSTFRRLLITSEEYKNDQNVIFRR 377
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 72.9 bits (171), Expect = 2e-14
Identities = 38/82 (46%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Frame = +1
Query: 1 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSV*IGGS 171
DIR L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ +GGS
Sbjct: 341 DIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGS 399
Query: 172 ILASLYTFQQMWISKQEYDESG 237
IL+SL TF Q+WIS+QEY+E G
Sbjct: 400 ILSSLGTFHQLWISRQEYEEHG 421
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 68.1 bits (159), Expect = 5e-13
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +1
Query: 1 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSV*IGGSI 174
++R L N V++GGT++ PG+++R+Q E+ LA S + + +V GGSI
Sbjct: 338 ELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSI 397
Query: 175 LASLYTFQQMWISKQEYDESG 237
LASL FQ +W+SKQEYDE G
Sbjct: 398 LASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 63.7 bits (148), Expect = 1e-11
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 12/91 (13%)
Frame = +1
Query: 1 DIRKDLYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERK 147
DIRK LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+
Sbjct: 288 DIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRR 347
Query: 148 YSV*IGGSILASLYT-FQQMWISKQEYDESG 237
++V IGG++LA + MW+SK E++E G
Sbjct: 348 HAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 49.6 bits (113), Expect = 2e-07
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Frame = +1
Query: 1 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST--------------MKIKIIAPP 138
D+RK LY N VLSGG+T++ +R+Q+++ + + + +I+
Sbjct: 321 DVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHK 380
Query: 139 ERKYSV*IGGSILASLYTFQQMWISKQEYDESGPSIVHR 255
++ +V GGS+LA F +K +Y+E G SI R
Sbjct: 381 RQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 39.9 bits (89), Expect = 1e-04
Identities = 19/81 (23%), Positives = 40/81 (49%)
Frame = +1
Query: 7 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILASL 186
++ L +N +++GG PG+ R+++E+T++ P I + G S +
Sbjct: 631 QQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVT 690
Query: 187 YTFQQMWISKQEYDESGPSIV 249
F+ ++++EY E GP +
Sbjct: 691 EKFKAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.3 bits (85), Expect = 4e-04
Identities = 24/85 (28%), Positives = 41/85 (48%)
Frame = +1
Query: 1 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILA 180
+I+ L N V GG +PG R+ E+ +LAP+ ++K+ P + S +
Sbjct: 314 NIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM- 372
Query: 181 SLYTFQQMWISKQEYDESGPSIVHR 255
L + I++ EY E G +I+ R
Sbjct: 373 PLEHWNANKITRSEYSEHGANIMTR 397
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.001
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +1
Query: 10 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSV*IGGSILA 180
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 181 SLYTFQQMWISKQEYDESGPSIV 249
+ ++WI ++ G ++
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVL 609
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 4.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 149 TPYESVDRSSPPSIPSNRCGSRNRSTTSLVPP 244
TP + PPSIPS+R R S ++ PP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 5.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 296 QQNLQEGGSNYACDLVNKFSI 358
++N E S A D++NKFSI
Sbjct: 256 RRNAMENASKSAGDMINKFSI 276
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 5.8
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 169 SILASLYTFQQMWISKQEYDESGPSIV-HRSASK 267
S++ +++ WI Y E GPS H+SAS+
Sbjct: 1243 SLITWMFSIGVFWIWTFIYSEVGPSYAFHKSASR 1276
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 24.6 bits (51), Expect = 5.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 216 FRDPHLLEGIEGGEDRSTDSYGVLPLW 136
F HLL + G+D + + YG L W
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSW 823
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 24.2 bits (50), Expect = 7.7
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -3
Query: 64 FQGTWWYHRTIRCW 23
F+ WY R I CW
Sbjct: 179 FENVQWYFRYINCW 192
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 24.2 bits (50), Expect = 7.7
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 179 PPSIPSNRCGSRNRSTTSLVPPLYTEVLLSVETLSYDALQQN-LQEGGSNYACDLVN 346
P SIP+ CG++ + ++P L + ++++ + +AL L + +CDL N
Sbjct: 198 PSSIPNCACGAKRQLEFQILPTLISS--MNIDHSAKNALDWGILSIYVCSASCDLAN 252
>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
7a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 24.2 bits (50), Expect = 7.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 181 SLYTFQQMWISKQEYDESGP 240
+++ FQ++WI QE +S P
Sbjct: 13 NVFCFQELWIECQEVQKSQP 32
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 24.2 bits (50), Expect = 7.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 221 STTSLVPPLYTEVLLSVETLSYDALQQNLQEGGS 322
S +S PP + E L+ + L+Y A L G+
Sbjct: 217 SISSFSPPTFLEQLVKEDILAYPAFSMYLDNQGN 250
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.2 bits (50), Expect = 7.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 184 LYTFQQMWISKQEYDESGPSIV 249
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,032
Number of Sequences: 5004
Number of extensions: 33610
Number of successful extensions: 121
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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