Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00257X
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              167   4e-42
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             166   5e-42
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             166   5e-42
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         166   5e-42
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      166   7e-42
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              164   2e-41
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                143   4e-35
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 57   5e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  53   1e-07
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)             32   0.20 
SB_17302| Best HMM Match : Pentaxin (HMM E-Value=1e-09)                29   1.9  
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   3.3  
SB_37642| Best HMM Match : fn3 (HMM E-Value=0)                         27   5.7  
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_37780| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 

>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  167 bits (405), Expect = 4e-42
 Identities = 79/85 (92%), Positives = 83/85 (97%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILA 180
           DIRKDLYANTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSV IGGSILA
Sbjct: 262 DIRKDLYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILA 321

Query: 181 SLYTFQQMWISKQEYDESGPSIVHR 255
           SL TFQQMWISKQEYDESGP+IVHR
Sbjct: 322 SLSTFQQMWISKQEYDESGPAIVHR 346


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  166 bits (404), Expect = 5e-42
 Identities = 80/85 (94%), Positives = 82/85 (96%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILA 180
           DIRKDLYANTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSV IGGSILA
Sbjct: 251 DIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 310

Query: 181 SLYTFQQMWISKQEYDESGPSIVHR 255
           SL TFQQMWISKQEYDESGP+IVHR
Sbjct: 311 SLSTFQQMWISKQEYDESGPAIVHR 335


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  166 bits (404), Expect = 5e-42
 Identities = 80/85 (94%), Positives = 82/85 (96%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILA 180
           DIRKDLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSV IGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILA 348

Query: 181 SLYTFQQMWISKQEYDESGPSIVHR 255
           SL TFQQMWISKQEYDESGPSIVHR
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHR 373


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  166 bits (404), Expect = 5e-42
 Identities = 80/85 (94%), Positives = 82/85 (96%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILA 180
           DIRKDLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSV IGGSILA
Sbjct: 288 DIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILA 347

Query: 181 SLYTFQQMWISKQEYDESGPSIVHR 255
           SL TFQQMWISKQEYDESGPSIVHR
Sbjct: 348 SLSTFQQMWISKQEYDESGPSIVHR 372


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  166 bits (403), Expect = 7e-42
 Identities = 80/85 (94%), Positives = 82/85 (96%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILA 180
           DIRKDLYANTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSV IGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 348

Query: 181 SLYTFQQMWISKQEYDESGPSIVHR 255
           SL TFQQMWISKQEYDESGPSIVHR
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHR 373


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  164 bits (399), Expect = 2e-41
 Identities = 79/85 (92%), Positives = 82/85 (96%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILA 180
           DIRKDLYANTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSV IGGSILA
Sbjct: 288 DIRKDLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 347

Query: 181 SLYTFQQMWISKQEYDESGPSIVHR 255
           SL TFQQMWISKQEYDESGPSIVHR
Sbjct: 348 SLSTFQQMWISKQEYDESGPSIVHR 372


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score =  143 bits (347), Expect = 4e-35
 Identities = 67/85 (78%), Positives = 76/85 (89%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILA 180
           DIRKDLY+N VLSGG+TM+PGIADRMQKEI  LA ++MK+K+IAPPERKYSV IGGSILA
Sbjct: 62  DIRKDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILA 121

Query: 181 SLYTFQQMWISKQEYDESGPSIVHR 255
           SL TFQQMWI+K+EY E GP IVHR
Sbjct: 122 SLSTFQQMWIAKEEYHEYGPPIVHR 146


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 16/98 (16%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIA 132
           D+R+ LY N VLSGG+TM+     R+Q++I                  + P  ++ ++I+
Sbjct: 237 DVRRPLYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVIS 296

Query: 133 PPERKYSV*IGGSILASLYTFQQMWISKQEYDESGPSI 246
              ++Y+V  GGS+LAS   F  +  +K +YDE GPSI
Sbjct: 297 HHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSI 334


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII---APPERKYSV*IGGS 171
           DIR  L+ + +++GG T+  G  +R+ +E+ +  P +M++K+I   +  E++++  IGGS
Sbjct: 166 DIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGS 225

Query: 172 ILASL 186
           ILASL
Sbjct: 226 ILASL 230


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +1

Query: 10  KDLYANTVLSGGTTMYPGIADRMQKEITA-LAPSTMKIKIIAPPERKYSV*IGGSILASL 186
           K LY   VL G T+         Q  +TA       KI+I  PP RK+ V +GG++LA +
Sbjct: 322 KQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADI 381

Query: 187 YTFQ-QMWISKQEYDESG 237
              +   W++++EY+E G
Sbjct: 382 MKDKDSFWMTRKEYEEKG 399


>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYS 153
           D RK L  N VL GGT M PG   R+ +EI  L  S           +K+  PP     +
Sbjct: 72  DTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANIT 131

Query: 154 V*IGGSILASLYTFQQMWISKQEYDE 231
             +GG+I  SL        +++ Y +
Sbjct: 132 AWLGGAIFGSLEVLADRSTTRERYQQ 157


>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
          Length = 367

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPG 63
           D+R+ LY+N VLSGG+T++ G
Sbjct: 271 DLRRVLYSNIVLSGGSTLFKG 291


>SB_17302| Best HMM Match : Pentaxin (HMM E-Value=1e-09)
          Length = 550

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 266 SVETLSYDALQQ-NLQEGGSNYACDLVNK 349
           ++  +S+   Q  N QEGGS +AC+L +K
Sbjct: 59  AINCMSHQQCQSFNYQEGGSTHACELTSK 87


>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 25  NTVLSGGTTMYPGIADRMQKEITALAP 105
           N  ++GG TMY     R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 173 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMV-VPPD-NTVLAYKSLRM 3
           +DPP+  +Y L+GG  ++   +        FCI     G++V  PP+ N+ +     R+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCI---FQGFVVPTPPECNSAIVLPDARI 813


>SB_37642| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 500

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 146 STPYESVDRSSPPSIPSNRCGSRNRSTTSLV 238
           S PYE     S PS P      +N S+TSLV
Sbjct: 159 SKPYEVKTGESAPSKPPRNITGQNASSTSLV 189


>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 146 STPYESVDRSSPPSIPSNRCGSRNRSTTSLVPPLYTEVLLSVE-TLSYDALQQNLQEG 316
           STP  +V    PP  PSN   + ++   S  P   T    + E T +  A  +++ EG
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTSTFEATSTTTATDEDMSEG 274


>SB_37780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 215 NRSTTSLVPPLYTEVLLSVETLSYDALQQNLQEGGSNYACDLVNK 349
           +R++  L+    +E  L VE+ SY+ L + +QE   ++   + NK
Sbjct: 67  SRASYILMKVKKSEDALGVESKSYEPLLRGIQENNPDFMAKVYNK 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,229,315
Number of Sequences: 59808
Number of extensions: 275413
Number of successful extensions: 739
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)