Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00257X
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             140   7e-36
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   2.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   3.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   3.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   3.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   6.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   9.2  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  140 bits (338), Expect = 7e-36
 Identities = 68/71 (95%), Positives = 69/71 (97%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV*IGGSILA 180
           DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSV IGGSILA
Sbjct: 63  DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILA 122

Query: 181 SLYTFQQMWIS 213
           SL TFQQMWIS
Sbjct: 123 SLSTFQQMWIS 133


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 253 CVQWRDQTRRTPVSRSTSVGRYRGRR 176
           CV      R+TP SR  S GR R RR
Sbjct: 389 CVACSPPPRQTPPSRKES-GRRRRRR 413


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 30  RIVRWYHHVPWNRRPYAK 83
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 30  RIVRWYHHVPWNRRPYAK 83
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 1   DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 147
           DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K
Sbjct: 349 DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK 395


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 193 FQQMWISKQEYDESGPSIVHR 255
           F+Q W S Q Y +    +V R
Sbjct: 151 FRQNWASLQPYKKLSVEVVRR 171


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 150 LRMNRWIDPRLPL 188
           L  N W+DP  P+
Sbjct: 339 LLQNTWLDPEYPM 351


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 135 GSNDLNLHCRWGESCDFL 82
           G+N+L     WGE   FL
Sbjct: 279 GNNNLKWLVNWGEQWGFL 296


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 132 SPREEVLRMNRWIDPRLPL 188
           +P  + + ++ WI P LPL
Sbjct: 531 NPLTDTVPIHTWIHPWLPL 549


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,135
Number of Sequences: 438
Number of extensions: 2353
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)