Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00256
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   0.84 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   6.0  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    21   7.9  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 466 ESQGIKLLAAELKSSFCCTVPTTSCPIT 549
           E +G++L+  E+K  +   + + SCPIT
Sbjct: 354 EQEGLQLIN-EMKKRYSALINSQSCPIT 380


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 259 SNGPDMGRKIPNRIPVRDENDCDTRAYIKDDSVKIVTL 372
           SN    G +  N IPV  +      AY++ D + I TL
Sbjct: 130 SNLTVSGLRCVNGIPVSSKTLASQSAYVQQDDLFIGTL 167


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 259 SNGPDMGRKIPNRIPVRDENDCDTRAYIKDDSVKIVTL 372
           SN    G +  N IPV  +      AY++ D + I TL
Sbjct: 130 SNLTVSGLRCVNGIPVSSKTLASQSAYVQQDDLFIGTL 167


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 239 NRQYQGSATGPTWVARSPTGSRCATKTTATP 331
           N+    + T PT V  S      A ++ ATP
Sbjct: 191 NKSASRTTTSPTKVKASKASPAAAPRSVATP 221


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 197 NGGLYSGFRNCYNVNRQYQGSATGP 271
           NG  +S F NC+  +    GS++ P
Sbjct: 15  NGSNFSKFINCHYTSGHLLGSSSLP 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,236
Number of Sequences: 336
Number of extensions: 3743
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)