Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00256
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.53 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   2.1  
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    27   3.7  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    27   3.7  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    26   6.5  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   8.6  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 259 SNGPDMGRKIPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPI-IPNSA 402
           S  P  G ++PN      +N+ + +  +K+DS K     SAPI +P S+
Sbjct: 31  SISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTSS 79


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 286 IPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 444
           +P  IPV  E+  DT+A +K  S + +T +   +I N+  DI R + E +  +
Sbjct: 173 LPQIIPVVSESMWDTKAEVKKQSKETMTKV-CTLIANA--DIDRFIPELINCI 222


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 242 RQYQGSATGPTWVARSPTGSRCATKT-TATPGL 337
           R+Y G A    W+ RSP+ S+   KT +ATP +
Sbjct: 7   REYDGKAVLAYWLNRSPSISKEEYKTVSATPAV 39


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 263 LLTLGTVGSRCSSCGSPNTVPR*RYSPHPSSQHAR 159
           LLTLGTV SR S+  +P+      + P+  S+  R
Sbjct: 385 LLTLGTVISRLSAAANPSLTSNSGHIPYRESKLTR 419


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 86  KYPYSDLPYIGQYKLLKLPFTGKLIEHVDYWGEGSIVNGGLYS 214
           K+  +  PY+ Q   LKL FTGKL     Y+     V G L S
Sbjct: 12  KWKVAVSPYLYQLSNLKLLFTGKLNFADFYYNTNPFVVGLLLS 54


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 328 CRSRFRRAPGSCWGSCDPCRARC*PLVLSVHVVAVAEARIQSPVDDT 188
           C+S +R +  S W  C+   A     + S++ V  A   +QSP + T
Sbjct: 382 CKSEYRCSAASFWVECEQPHAD----LYSLNGVVKAPGAVQSPSEST 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,395
Number of Sequences: 5004
Number of extensions: 60355
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)