Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00256
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0784 - 24557089-24557198,24557296-24560725 33 0.32
07_01_0245 - 1803170-1803887,1803971-1804641 32 0.42
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 32 0.42
12_01_0622 + 5124213-5125292,5126820-5128685 31 0.97
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 30 2.2
08_02_0965 + 23078568-23079430,23079527-23079755,23079854-23080018 29 2.9
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605... 29 5.2
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270... 28 9.0
03_02_0486 - 8811539-8811610,8811725-8812231,8812327-8812551,881... 28 9.0
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 438 AHAFVNDSRNVSGAVRNDGRAHERHYFDRVILD-VSPGVAVVFVAHRDPVGDLATH 274
AH F+ D R+ G++++ GR++ R + G V +V H D + DLA H
Sbjct: 470 AHEFIQDGRHTYGSLKSTGRSYFDELLSRSFFQALQYGGTVHYVMH-DLMNDLAVH 524
>07_01_0245 - 1803170-1803887,1803971-1804641
Length = 462
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 273 VGPVADPWYCRFTL*QLRKPEYSPPLTILPSPQ*STCSISFPVKGSLSSLY 121
V P P YC+ L +L PL + PSP+ S P G+L++ +
Sbjct: 31 VHPSTSPCYCKIRLNKLPYQTADAPLLLPPSPEASAAPAPAPATGALAAAF 81
>06_03_0783 -
24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 32.3 bits (70), Expect = 0.42
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 438 AHAFVNDSRNVSGAVRNDGRAHERHYFDRVILD-VSPGVAVVFVAHRDPVGDLATH 274
AH F+ D + G++R+ GR++ F R + G V +V H D + DLA H
Sbjct: 505 AHEFIQDHGHTYGSLRSTGRSYFDELFSRSFFQALQYGGTVHYVMH-DLMNDLAFH 559
>12_01_0622 + 5124213-5125292,5126820-5128685
Length = 981
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -2
Query: 540 AARSRDSTAEAAL*LGSQELNTLRLYRHAVYDDHAH 433
AAR R + L +ELN LRL H V DDH H
Sbjct: 119 AARGRIADRIRELKASVEELNQLRLRYHIVVDDHHH 154
>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 438 AHAFVNDSRNVSGAVRNDGRAHERHYFDRVILDVSP-GVAVVFVAHRDPVGDLATHV 271
A FV+ RN++ ++ + GR + R V G + ++ H D + DLA HV
Sbjct: 1338 AQGFVHSDRNINTSLEDIGRGYFNDLLQRSFFQVFRCGDQIYYIMH-DVLNDLALHV 1393
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 438 AHAFVNDSRNVSGAVRNDGRAHERHYFDRVILD-VSPGVAVVFVAHRDPVGDLATHV 271
AH F+ D G++ + G+++ R + G V +V H D + DLA HV
Sbjct: 470 AHEFIQDRGRTYGSLTSTGKSYFDELLSRSFFQALRYGGTVHYVMH-DLMNDLAVHV 525
>08_02_0965 + 23078568-23079430,23079527-23079755,23079854-23080018
Length = 418
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +2
Query: 149 GKLIEH-VDYWGEGSIVNGGLYSGFRNCYNVNRQYQGSATGPTWVARSPTG 298
GK H V+ W GS G G R+ + V R Y G W A G
Sbjct: 208 GKYDGHGVESWARGSRYRGQYRQGLRHGHGVYRFYSGDCYAGEWAAGQSHG 258
>08_02_1340 -
26256768-26256999,26258105-26258774,26259273-26260555,
26262403-26263499
Length = 1093
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +1
Query: 214 GLPQLLQREPTVPRV-------SNGPDMGRKIPNRIPVRDENDCDTRAYIKD 348
G L+ PT PR GP G +P+R P++D DC+ A I+D
Sbjct: 396 GKAPCLEPPPTPPRAMAAAAAAEAGPSRGGCVPSRNPLKDPGDCEAVA-IRD 446
>09_03_0029 +
11724581-11724583,11726413-11726610,11726874-11727038,
11727217-11727283,11727645-11727812,11728070-11728194,
11728288-11728446,11728552-11728714,11728795-11728920,
11729000-11729083,11729161-11729528,11729613-11729813,
11729909-11730018,11730113-11730197,11730360-11730488,
11730580-11730667,11730805-11730893,11730968-11731267
Length = 875
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 74 NVDLKYPYSDLPYIGQYKLLKLPFTGKLIEHVDYWGEGSIVNGGL 208
N+D+ + Y+++ Q+ LL P TGK EH+ ++G + G +
Sbjct: 629 NMDMDHIYTNMGVCPQHDLLWEPLTGK--EHLFFYGRLKNLKGAV 671
>03_02_0486 -
8811539-8811610,8811725-8812231,8812327-8812551,
8812648-8813064
Length = 406
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -1
Query: 328 CRSRFRRAPGSCWGSCDPCRARC*PLVLSVHVVAVAEARIQSPVDDTPLTPVVNMLDQLS 149
C FRR PG G RC V + A EA +S + T LT + +Q
Sbjct: 25 CGLSFRRQPGRLAGGSSAPSVRCMAAVDTASAPAATEASKKSSYEITTLTTWLLKQEQAG 84
Query: 148 S-EGEL 134
+ +GE+
Sbjct: 85 TIDGEM 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,294,419
Number of Sequences: 37544
Number of extensions: 449030
Number of successful extensions: 1405
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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