Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00255
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 30 0.32
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.32
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.43
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 28 0.99
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar... 28 1.3
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi... 27 1.7
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 3.0
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 26 4.0
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 4.0
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 26 4.0
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S... 26 5.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 5.3
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 5.3
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 5.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 5.3
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 7.0
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 25 9.2
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 9.2
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 29.9 bits (64), Expect = 0.32
Identities = 40/162 (24%), Positives = 58/162 (35%), Gaps = 9/162 (5%)
Frame = +3
Query: 15 GGRPQHRQQPVDTRPPGQHTEAHSYRCHHADVPRRTIGCLRSSARQQLVSTRNSYSGANA 194
G P + VD +PP HT S R + A+V T S A L + SY A
Sbjct: 67 GAAPTNIIGSVDQQPPVSHTSHKSRRQYPAEVFELTNTLAASPAPPSL--SEPSYVMART 124
Query: 195 ASAQVCSGSSGGAGGRPVQHXXXXXXXGFPHKSQHQRN----VQFPNSALTMAMGQQPPP 362
S+ G + + G + N V N ++ PPP
Sbjct: 125 PSSSPYPHDRAEVGTKSLSAQFGGMSLGADGAAAMPTNELVSVDLYNQTPEISDLTSPPP 184
Query: 363 ----PLVRSTANTTTMNVPPQ-VTGTMNGHSTSQSVDTRKRL 473
PL S T N PP+ V T+N T+ S+ + ++
Sbjct: 185 PINLPLSYSATGAATSNCPPKYVRSTINCVPTTNSLLKKSKI 226
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.32
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 354 PPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDTRKRLTPIPDINTTGN 506
P P V T+ ++T PP + + G S+S + T T I TGN
Sbjct: 354 PVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGN 404
Score = 28.7 bits (61), Expect = 0.75
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 354 PPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDTRKRLTPIPDINTTGN 506
P P V T+ ++T PP + + G S+S T T I TGN
Sbjct: 300 PVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGN 350
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 354 PPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDTRKRLTP-IPDINTT 500
PPPP S+ T++ +P T S + ++ +TP +P +T+
Sbjct: 316 PPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTS 365
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.43
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 306 NVQF--PNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDT 461
NV F P+S L + +P P + N T ++ P T T GH T +V T
Sbjct: 851 NVDFYEPHSYLE-SPAPEPQPSYEEESFNATVIHAPTPSTATFQGHPTISNVAT 903
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 28.3 bits (60), Expect = 0.99
Identities = 27/100 (27%), Positives = 43/100 (43%)
Frame = +3
Query: 282 PHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDT 461
P ++ QR + L+ PP+ T TT+ NVPP ++ S S S
Sbjct: 348 PPRAPLQRTPSGSLTPLSSRPAHTSLPPI--PTVQTTSSNVPPVNRPSLKSKSPSVSNIL 405
Query: 462 RKRLTPIPDINTTGNQRRIRYKRR*WKTQWCLASIRSPTS 581
+L+PI N R++ K T+ A+I++P S
Sbjct: 406 SNQLSPISSAN-NDVMARLQPKSPIPATKSYSATIQTPRS 444
>SPAC222.11 |hem13||coproporphyrinogen III oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 312
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 338 GDGSATPSTSCEEHGQHNNYERASASDRHD 427
G TPS EE G+H + A DRHD
Sbjct: 139 GGADLTPSILFEEDGKHFHKLHKEACDRHD 168
>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
L34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 420 GTMNGHSTSQSVDTRKRLTPIPDINTTGNQRRIRYK 527
GTM G T +T + +P +N G +++R+K
Sbjct: 28 GTMRGFPTRNPFNTATLYSSLPTMNIFGQMQQVRWK 63
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 171 NSYSGANAASAQVCSGSSGGAGGRPV 248
++Y+ N Q SG+SGG+ G PV
Sbjct: 210 DNYNDFNTFYYQAASGTSGGSSGSPV 235
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -1
Query: 508 WLPVVLMSGIGVSLLRVSTD*EVEWPFIVPVTCGGTFIVVVLAVLLTRGG 359
W+ + L+ IG++L V EVE+ + + T ++LA+++ GG
Sbjct: 192 WISIFLVVVIGINLFGVRVFGEVEF-VLALIKVVATVGFIILAIIINCGG 240
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 318 PNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGT 425
P S ++ + QQ P L++S+ + ++ PP+V G+
Sbjct: 463 PKSEVSPSQSQQAP--LIQSSTSPVSLQFPPEVQGS 496
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 448 NPWTLAKGLHRY-QTSTLLATNAV*GTKGVSGKHNGALHQFEALPVHG 588
N T+A H Y QT+T+L G++ + K+NGA H E L G
Sbjct: 29 NGLTVATEHHPYAQTATVLVGVDA-GSRAETAKNNGAAHFLEHLAFKG 75
>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 445
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 245 GTTRCHRSGRRIST*IAAPE 304
G RC + G+R+ST + PE
Sbjct: 305 GVARCMQKGKRLSTFVGTPE 324
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 318 PNSALTMAMGQQPPPPLVRSTANTTTMNVP 407
P A T A+ PPPP VRS+ + + P
Sbjct: 732 PTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 256 LPSQRPPDFHINRSTRETFSF 318
LP Q D HI RS+ ET F
Sbjct: 98 LPKQAKDDHHIKRSSSETADF 118
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 21 RPQHRQQPVDTRPPGQHTEAHSYRCHHADVPRRTIGCL 134
+PQ QQP + P +TEA+ R VP R + L
Sbjct: 167 QPQQTQQPQASSPTAPNTEANQQR--SGSVPGRIVPAL 202
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 348 QQPPPPLVRSTANTTTMNVPPQVTGTMN 431
+QPP + NT+T N P V G+ N
Sbjct: 127 KQPPQSADKQVENTSTSNPPVSVEGSEN 154
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 580 VHGAADDPAGPWQPLLPA 633
VHG + A P+QPL PA
Sbjct: 1718 VHGVGAEMASPYQPLQPA 1735
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 517 IRRWLPVVLMSGIGVSLLRVSTD*EVEW 434
+RRW+P +G+ ++ L STD VEW
Sbjct: 120 LRRWMPDPEDAGVPLAGLEESTD-NVEW 146
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -3
Query: 485 WYR----CKPFASVHGLRG*VAIHRAGHLRRHVHSCCVGRAPHKRWRGL 351
WY+ CK A + G V AG+L+ VHS G+ WR L
Sbjct: 148 WYKESELCKR-AGIFSASGLVGTMFAGYLQTAVHSSLNGKGGLSGWRWL 195
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 354 PPPPLVRSTANTTTMNVPPQVTG 422
PP P+ + AN + PP TG
Sbjct: 357 PPKPMQKFPANAASSESPPNATG 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,056
Number of Sequences: 5004
Number of extensions: 54669
Number of successful extensions: 203
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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