Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00255
(640 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_38777| Best HMM Match : Mov34 (HMM E-Value=1.6e-19) 32 0.34
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 31 0.79
SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07) 30 1.4
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22) 30 1.8
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016) 30 1.8
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 28 5.6
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_39432| Best HMM Match : DTHCT (HMM E-Value=3.9) 28 5.6
SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3) 28 5.6
SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12) 28 5.6
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_53134| Best HMM Match : PAN (HMM E-Value=0.0002) 28 7.4
SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96) 28 7.4
SB_3876| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 27 9.7
SB_43275| Best HMM Match : GoLoco (HMM E-Value=3) 27 9.7
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 27 9.7
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8) 27 9.7
SB_3587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 32.3 bits (70), Expect = 0.34
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = +3
Query: 333 TMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDTRKRLTPIPDINTTGNQR 512
T A +PP +TA TT P T +T+Q TRK T T N R
Sbjct: 1440 TTASETKPPTIRKTTTATTTVPATKPPTTRKTTTATTTQGRTTRKPTTTAEPPTTVDNLR 1499
Query: 513 RIRYK 527
RI K
Sbjct: 1500 RISTK 1504
>SB_38777| Best HMM Match : Mov34 (HMM E-Value=1.6e-19)
Length = 431
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 321 NSALTMAMGQQPPPPLVRSTANTTTMNVP-PQVTGTMNGHSTSQSVDTRKRLTP 479
NSA PPPPL ++T + P P T+N +ST +TR TP
Sbjct: 161 NSAPVTVTPSAPPPPLDGPLSSTLIGDYPAPPTLRTINSNSTITGDNTRSHTTP 214
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 31.1 bits (67), Expect = 0.79
Identities = 22/103 (21%), Positives = 41/103 (39%)
Frame = +3
Query: 162 STRNSYSGANAASAQVCSGSSGGAGGRPVQHXXXXXXXGFPHKSQHQRNVQFPNSALTMA 341
S+R+S S ++ +SA S + A + +S+ +N P+S +
Sbjct: 1039 SSRSSSSSSSGSSASSSSSGNDAAKVKKEVKEAKGESKEVVKESKEVKNKALPDSKPAVK 1098
Query: 342 MGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDTRKR 470
PPP R + + + +V + G +S S +R R
Sbjct: 1099 SSPSPPPTKPRPSRRSLSKSVSKSPSPARKGKRSSSSSSSRSR 1141
>SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07)
Length = 276
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 81 HSYRCHHADVPRRTIGCLRSSA 146
HSY+C H D RR + C++S A
Sbjct: 114 HSYKCVHPDPNRRPVNCVQSYA 135
>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 417 TGTMNGHSTSQSVDTRKR--LTPIPDINTTGNQRRIRYKR 530
TG++ G SQ TR + ++ +PD++ GN++R R R
Sbjct: 824 TGSLAGRKVSQKKRTRSQENVSQVPDVDFAGNKQRSRGSR 863
>SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22)
Length = 472
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Frame = +2
Query: 245 GTTRCHRSGRRIST*IAAPEKRSVSEQCTNNGDGSATPSTS---CEEHG--QHNNYERAS 409
G CH +G + C DG AT C+E+ QH YE+A+
Sbjct: 371 GLFECHGAGGNQMWSLTKSSLLKHETMCLGVNDGKATEPVQLLDCDENNSMQHWEYEKAT 430
Query: 410 ASDRHDEWPLNLSIRGHSQKAYT 478
+ RH L LS H T
Sbjct: 431 SRLRHKPTSLCLSSDKHKTSGLT 453
>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
Length = 419
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = +3
Query: 282 PHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDT 461
P S+ Q + Q P++ T+ +Q PP R +N + PP T +
Sbjct: 297 PPPSRGQSDKQSPSTPPTVQSDKQSPPTPSRGQSNKQSSPTPPPRQSDKQSPPTPSRGQS 356
Query: 462 RKRLTPIP 485
K+ +P P
Sbjct: 357 NKQSSPTP 364
>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/84 (22%), Positives = 34/84 (40%)
Frame = +2
Query: 245 GTTRCHRSGRRIST*IAAPEKRSVSEQCTNNGDGSATPSTSCEEHGQHNNYERASASDRH 424
G+ RCH+ + + +K S + NG T S++C + A D H
Sbjct: 247 GSLRCHQKELQFQPSVIIKKKYSSASMVQENG----TASSTCGDLLVSGYSTSAQQDDIH 302
Query: 425 DEWPLNLSIRGHSQKAYTDTRHQH 496
+E+P N + + +T+ H
Sbjct: 303 NEFPPNPATNDEEGMQHRNTKPAH 326
>SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +3
Query: 288 KSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGH 437
+ +Q+ Q PN GQ PPP R TT PP TG H
Sbjct: 511 RGPYQQTAQHPNQQ--GGRGQAPPPSYGRGGPTTTVQQQPPP-TGEAPAH 557
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/51 (23%), Positives = 21/51 (41%)
Frame = -1
Query: 250 CTGRPPAPPLEPEQTXXXXXXAPE*EFRVETSCWRALERRQPIVRRGTSAW 98
C G PP PP P P + ++ W+ ++ ++P T+ W
Sbjct: 736 CAGLPPPPPPPPPGCAGLPPPPPPIDVPMKPLFWKRIQLKKPQPEPYTTLW 786
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 262 SQRPPDFHINRSTRETFSFR 321
S PDFH N TR +FS+R
Sbjct: 57 SSSDPDFHANSKTRRSFSWR 76
>SB_39432| Best HMM Match : DTHCT (HMM E-Value=3.9)
Length = 198
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +3
Query: 300 QRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDTRKRLTP 479
+RN+ PN A + Q P P + + ++ + T N H+ + V R R+
Sbjct: 92 ERNM--PNEAESKHTKQTPAPNTLNTPIKKPQESLENSDSTTQNRHTEVREVKKRDRIQS 149
Query: 480 IPDINTTGNQRR 515
P T NQ R
Sbjct: 150 DPSSPLTANQTR 161
>SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3)
Length = 171
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 372 RSTANTT-TMNVPPQVTGTMNGHSTSQSVDTRKRLTPIPDINTTGNQRRIRYKRR 533
RS+A+ T+N+P + T + S+ VD + L P P NT R R KRR
Sbjct: 86 RSSASAEPTLNLPSPPSKTPSSASSQAKVD-KTPLLPSPPTNTPRPSRIPRLKRR 139
>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
Length = 549
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 290 IAAPEKRSVSEQCTNNGDGSATPSTSCEEHGQHNNYERASASD-RHDEWPLNL 445
+ +P+ +S +N DG+ T G+HN Y S SD +H + LN+
Sbjct: 421 LESPDGSVISAHVLDNKDGTYTVFYCPRTPGEHNVYVSISGSDIKHGQRLLNI 473
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +3
Query: 318 PNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDTR--KRLTPIPDI 491
PN+ T P +T NTTT N P T T +T+ + T T P+
Sbjct: 167 PNTTTTTPTATTTTPTATTTTPNTTT-NTPNATTTTPTATTTTPNATTTTPNTTTTTPNA 225
Query: 492 NTT 500
TT
Sbjct: 226 TTT 228
>SB_53134| Best HMM Match : PAN (HMM E-Value=0.0002)
Length = 648
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 374 EHGQHNNYERASASDRHDEWPLNLSIRGHSQKAYTDTRHQHYWQPTPYKVQKALV 538
EH N+ + +D H+E S H K Y D + ++YW T K +K V
Sbjct: 59 EHVTRNHRSLYATNDFHEEPNFEESC-AHWLKRYPDLKTRYYWIKTKNKRKKMRV 112
>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 446 SIRGHSQKAYTDTRHQHYWQPTPYKVQKALVENTMVPCINSKPYQ 580
SIRGH + + +T + +W + ++LVE VP SKP Q
Sbjct: 833 SIRGHVRFSDHNTISEVHWTSLIGHLSQSLVETNNVPRPPSKPAQ 877
>SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96)
Length = 651
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +3
Query: 363 PLVRSTANTTTMNVPPQVTGTMNGHST----SQSVDTRKRLTPIPDINTT 500
PLV+S + T+ NV ++ T +ST S SV LTP PD+ +T
Sbjct: 165 PLVQSISALTSPNV--RINRTTEANSTMILSSTSVSYNTTLTPAPDVAST 212
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +3
Query: 363 PLVRSTANTTTMNVPPQVTGTMNGHST----SQSVDTRKRLTPIPDINTT 500
PLV+S + T+ NV ++ T +ST S SV LTP PD+ +T
Sbjct: 538 PLVQSISALTSPNV--RINRTTEANSTMILSSTSVSYNTTLTPAPDVAST 585
>SB_3876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 374 EHGQHNNYERASASDRHDEWPLNLSIRGHSQKAYTDTRHQHYWQPTPYKVQKALV 538
EH N+ + +D H+E S H K Y D + ++YW T K +K V
Sbjct: 59 EHVTRNHRSLYATNDFHEEPNFEESC-AHWLKRYPDLKTRYYWIKTKNKRKKMRV 112
>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +3
Query: 375 STANTTTMNVPPQVTGTMNGHSTSQSVDTRKRLTPIPDINTTGNQRRIRYKR 530
S++N +T P V T+ TSQS R+R+ I NT+G RR+R KR
Sbjct: 150 SSSNVSTTRSPVTVARTI----TSQS-SNRQRVCEIFG-NTSGRSRRVRGKR 195
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Frame = +2
Query: 308 RSVSEQCTNNGDGSATPSTSCEEHGQHN----NYERASASDRHDEWPLNLSIRGHSQKAY 475
RS S N A P TS GQ +Y SA R + + G +AY
Sbjct: 59 RSWSSPLFNRRQAHALPRTSVSNTGQSRQLPPSYRNLSALFRRLSVIADHTKEGQLSQAY 118
Query: 476 TDTRHQHYWQP 508
++ + YW P
Sbjct: 119 KESDFKQYWMP 129
>SB_43275| Best HMM Match : GoLoco (HMM E-Value=3)
Length = 85
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 285 HKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQ 413
+ S + N QFP +LT A ++ P PL + ++ +P Q
Sbjct: 39 NSSVNDHNSQFPRWSLTRASSRKRPAPLTTTILSSQGGRLPEQ 81
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 336 MAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDTRKRLTP 479
MAM + PP L+ +T +T+ V P + G N V K L P
Sbjct: 169 MAMHRMPPSTLMGATGTVSTVGV-PGLGGAQNPLGPGPQVQASKPLFP 215
>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
Length = 622
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +3
Query: 363 PLVRSTANTTTMNVPPQVTGTMNGHST----SQSVDTRKRLTPIPDINTT 500
PLV+S + T+ N+ ++ T +ST S SV LTP PD+ +T
Sbjct: 498 PLVQSISALTSPNI--RINRTTEANSTMILSSTSVSYNTTLTPAPDVAST 545
>SB_3587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 285 HKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQ 413
+ S + N QFP +LT A ++ P PL + ++ +P Q
Sbjct: 109 NSSVNDHNSQFPRWSLTRASSRKRPAPLTTTILSSQGGRLPEQ 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,643,577
Number of Sequences: 59808
Number of extensions: 505111
Number of successful extensions: 1832
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1820
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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