BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS00255 (640 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81017-3|CAB54257.1| 629|Caenorhabditis elegans Hypothetical pr... 33 0.23 Z81017-2|CAB02672.1| 578|Caenorhabditis elegans Hypothetical pr... 33 0.23 Z81017-1|CAB02669.1| 592|Caenorhabditis elegans Hypothetical pr... 33 0.23 U80221-1|AAB38367.1| 579|Caenorhabditis elegans F58A3.1b protein. 33 0.23 U80220-1|AAB38366.1| 592|Caenorhabditis elegans F58A3.1a protein. 33 0.23 Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p... 32 0.40 AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical... 32 0.40 Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 31 0.53 U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of... 31 0.92 L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein. 31 0.92 S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 30 1.2 S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 30 1.2 AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 30 1.2 AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 30 1.2 AF106578-1|AAC78197.1| 252|Caenorhabditis elegans Hypothetical ... 29 2.1 AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical ... 29 2.1 Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 29 3.7 AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 29 3.7 AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 4.9 Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr... 28 6.5 Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr... 28 6.5 AL132948-35|CAC51060.2| 887|Caenorhabditis elegans Hypothetical... 28 6.5 AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 6.5 AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 28 6.5 AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 28 6.5 AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 6.5 AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 6.5 AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical... 27 8.6 AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 27 8.6 >Z81017-3|CAB54257.1| 629|Caenorhabditis elegans Hypothetical protein F58A3.1c protein. Length = 629 Score = 32.7 bits (71), Expect = 0.23 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%) Frame = +3 Query: 216 GSSGGAGGRPVQHXXXXXXXGFPHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTT 395 GS G GG P P+ H + Q PNS + GQ PP + +N Sbjct: 509 GSMQGHGGMPPMPSTMANQMPPPNLPPHTMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNM 568 Query: 396 M--NVPP-----QVTGTMNGHSTSQ 449 M +PP Q+ G+M+ +Q Sbjct: 569 MGSGMPPMSMSSQMPGSMSNPMPNQ 593 >Z81017-2|CAB02672.1| 578|Caenorhabditis elegans Hypothetical protein F58A3.1b protein. Length = 578 Score = 32.7 bits (71), Expect = 0.23 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%) Frame = +3 Query: 216 GSSGGAGGRPVQHXXXXXXXGFPHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTT 395 GS G GG P P+ H + Q PNS + GQ PP + +N Sbjct: 458 GSMQGHGGMPPMPSTMANQMPPPNLPPHTMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNM 517 Query: 396 M--NVPP-----QVTGTMNGHSTSQ 449 M +PP Q+ G+M+ +Q Sbjct: 518 MGSGMPPMSMSSQMPGSMSNPMPNQ 542 >Z81017-1|CAB02669.1| 592|Caenorhabditis elegans Hypothetical protein F58A3.1a protein. Length = 592 Score = 32.7 bits (71), Expect = 0.23 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%) Frame = +3 Query: 216 GSSGGAGGRPVQHXXXXXXXGFPHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTT 395 GS G GG P P+ H + Q PNS + GQ PP + +N Sbjct: 472 GSMQGHGGMPPMPSTMANQMPPPNLPPHTMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNM 531 Query: 396 M--NVPP-----QVTGTMNGHSTSQ 449 M +PP Q+ G+M+ +Q Sbjct: 532 MGSGMPPMSMSSQMPGSMSNPMPNQ 556 >U80221-1|AAB38367.1| 579|Caenorhabditis elegans F58A3.1b protein. Length = 579 Score = 32.7 bits (71), Expect = 0.23 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%) Frame = +3 Query: 216 GSSGGAGGRPVQHXXXXXXXGFPHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTT 395 GS G GG P P+ H + Q PNS + GQ PP + +N Sbjct: 459 GSMQGHGGMPPMPSTMANQMPPPNLPPHTMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNM 518 Query: 396 M--NVPP-----QVTGTMNGHSTSQ 449 M +PP Q+ G+M+ +Q Sbjct: 519 MGSGMPPMSMSSQMPGSMSNPMPNQ 543 >U80220-1|AAB38366.1| 592|Caenorhabditis elegans F58A3.1a protein. Length = 592 Score = 32.7 bits (71), Expect = 0.23 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%) Frame = +3 Query: 216 GSSGGAGGRPVQHXXXXXXXGFPHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTT 395 GS G GG P P+ H + Q PNS + GQ PP + +N Sbjct: 472 GSMQGHGGMPPMPSTMANQMPPPNLPPHTMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNM 531 Query: 396 M--NVPP-----QVTGTMNGHSTSQ 449 M +PP Q+ G+M+ +Q Sbjct: 532 MGSGMPPMSMSSQMPGSMSNPMPNQ 556 >Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical protein C24H11.7 protein. Length = 1820 Score = 31.9 bits (69), Expect = 0.40 Identities = 20/58 (34%), Positives = 26/58 (44%) Frame = +3 Query: 282 PHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSV 455 P Q Q P A G +PPPP STA T+T + P + + ST+ SV Sbjct: 1737 PRPGQQQSEASEPKKE--HASGLEPPPPSSNSTAATSTSD--PSIATAQSSISTASSV 1790 >AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical protein C24H11.7 protein. Length = 1820 Score = 31.9 bits (69), Expect = 0.40 Identities = 20/58 (34%), Positives = 26/58 (44%) Frame = +3 Query: 282 PHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSV 455 P Q Q P A G +PPPP STA T+T + P + + ST+ SV Sbjct: 1737 PRPGQQQSEASEPKKE--HASGLEPPPPSSNSTAATSTSD--PSIATAQSSISTASSV 1790 >Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein ZK1067.2 protein. Length = 2219 Score = 31.5 bits (68), Expect = 0.53 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Frame = +2 Query: 359 STSCEEH-GQHNNYERASASDRHDEW--PLNLSIRGHSQKAYTDTRHQHYWQPTPYKVQK 529 STS E H G HN S R D++ P N + + TD + Q PY+ ++ Sbjct: 413 STSMENHLGFHNGGGTVSEHSRDDKFVSPQNCEEKRKYCEEDTDAKPQQ-----PYRFEE 467 Query: 530 ALVENTMVPCINSKPYQYTELLMTLPDLGSHFFP 631 E V C S+P + + L ++P L + P Sbjct: 468 IKFEPIWVKCEKSEPPEDFKTLPSVPVLSEYVNP 501 >U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of certain neuronsprotein 1 protein. Length = 778 Score = 30.7 bits (66), Expect = 0.92 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +3 Query: 357 PPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDTRKRL 473 PPP ST TTT PP T N + + +T K + Sbjct: 356 PPPTTTSTTTTTTTTPPPTTTARPNQRAIVSNPETIKAM 394 >L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein. Length = 778 Score = 30.7 bits (66), Expect = 0.92 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +3 Query: 357 PPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDTRKRL 473 PPP ST TTT PP T N + + +T K + Sbjct: 356 PPPTTTSTTTTTTTTPPPTTTARPNQRAIVSNPETIKAM 394 >S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. Length = 919 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = +3 Query: 162 STRNSYSGANAASAQVCSGSSGGAGGR 242 STRN+ G+ AA Q CS SS G+GG+ Sbjct: 441 STRNA--GSRAALIQECSSSSSGSGGK 465 >S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. Length = 947 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = +3 Query: 162 STRNSYSGANAASAQVCSGSSGGAGGR 242 STRN+ G+ AA Q CS SS G+GG+ Sbjct: 469 STRNA--GSRAALIQECSSSSSGSGGK 493 >AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated protein 5, isoform b protein. Length = 567 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = +3 Query: 162 STRNSYSGANAASAQVCSGSSGGAGGR 242 STRN+ G+ AA Q CS SS G+GG+ Sbjct: 441 STRNA--GSRAALIQECSSSSSGSGGK 465 >AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated protein 5, isoform a protein. Length = 919 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = +3 Query: 162 STRNSYSGANAASAQVCSGSSGGAGGR 242 STRN+ G+ AA Q CS SS G+GG+ Sbjct: 441 STRNA--GSRAALIQECSSSSSGSGGK 465 >AF106578-1|AAC78197.1| 252|Caenorhabditis elegans Hypothetical protein H11L12.1 protein. Length = 252 Score = 29.5 bits (63), Expect = 2.1 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Frame = +3 Query: 324 SALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQ--SVDTRKRLTPIPDINT 497 +A TM+ G+ P V+ N + V + GT Q +K+ P D+N Sbjct: 145 TASTMSDGE-PEEDKVKLCGNRLEVGVTDNLAGTQRRKEQQQLQGAQAKKQQAPQRDVNR 203 Query: 498 TGNQRRIRYKRR 533 N +++ KRR Sbjct: 204 KANHQKLSRKRR 215 >AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical protein Y119C1A.1 protein. Length = 256 Score = 29.5 bits (63), Expect = 2.1 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +3 Query: 276 GFPHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPP 410 GFP S Q Q PN A+ PP STA++++ + P Sbjct: 22 GFPQFSYPQHQQQIPNPPYGWALNAAALPPYPSSTASSSSASQTP 66 >Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical protein F33E2.7 protein. Length = 174 Score = 28.7 bits (61), Expect = 3.7 Identities = 14/46 (30%), Positives = 21/46 (45%) Frame = +3 Query: 363 PLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDTRKRLTPIPDINTT 500 P +T TTT P T T +T+ + T R TP+ ++ T Sbjct: 102 PTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTRSTPLTEVFRT 147 >AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical protein Y69A2AR.31 protein. Length = 1219 Score = 28.7 bits (61), Expect = 3.7 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +3 Query: 375 STANTTTMNVPPQVTGTMNGHSTSQSVDTRKRLTPIP 485 +T TTT VPP T T + +V T R T +P Sbjct: 339 TTTTTTTTTVPPTTTRTTTTTTPRPTVPTVPRTTTVP 375 >AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical protein Y48G9A.4 protein. Length = 1115 Score = 28.3 bits (60), Expect = 4.9 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Frame = +3 Query: 282 PHKSQHQRNVQFPNSALTMAMGQQPPPPLVRS--TANTTTMNVPP 410 PHK Q + + P + PPPP + AN T + +PP Sbjct: 518 PHKEQRRSTSKDPPRPAPPPVSSIPPPPPIAGLLAANGTNVPIPP 562 >Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein F40F11.2b protein. Length = 1607 Score = 27.9 bits (59), Expect = 6.5 Identities = 19/81 (23%), Positives = 32/81 (39%) Frame = +3 Query: 282 PHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDT 461 P K + PN+A +A QQ PP + T M+ P T + S S + + Sbjct: 338 PAKKAAPKRKTVPNTAKNLAQNQQIMPPQAQITPTKLVMD--PPTTTMVPSSSQSNHMYS 395 Query: 462 RKRLTPIPDINTTGNQRRIRY 524 T ++ G ++ +Y Sbjct: 396 NDGFTTYNQMDEPGTSQQQQY 416 >Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein F40F11.2a protein. Length = 1593 Score = 27.9 bits (59), Expect = 6.5 Identities = 19/81 (23%), Positives = 32/81 (39%) Frame = +3 Query: 282 PHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDT 461 P K + PN+A +A QQ PP + T M+ P T + S S + + Sbjct: 324 PAKKAAPKRKTVPNTAKNLAQNQQIMPPQAQITPTKLVMD--PPTTTMVPSSSQSNHMYS 381 Query: 462 RKRLTPIPDINTTGNQRRIRY 524 T ++ G ++ +Y Sbjct: 382 NDGFTTYNQMDEPGTSQQQQY 402 >AL132948-35|CAC51060.2| 887|Caenorhabditis elegans Hypothetical protein Y39B6A.47 protein. Length = 887 Score = 27.9 bits (59), Expect = 6.5 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Frame = +3 Query: 186 ANAASAQVCSGSSGGAGGRPVQHXXXXXXXGFPHKSQHQRNVQFPNSALTMAM--GQQPP 359 AN+ S SS + GR + P Q +R P+S + + G QP Sbjct: 584 ANSIGTVSLSASSKSSSGRVLSSRPHTVQIFSPIFLQPKRLTLIPDSKFQLEVVGGSQPT 643 Query: 360 PPLVRSTANTTTMNVPP 410 PPL S N+ ++ P Sbjct: 644 PPLDFSLNNSMIASIEP 660 >AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. Length = 1666 Score = 27.9 bits (59), Expect = 6.5 Identities = 14/55 (25%), Positives = 25/55 (45%) Frame = +3 Query: 291 SQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSV 455 S H ++ ++ QQ P+VRS + TT ++P G G + S ++ Sbjct: 916 SMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGDSFGSAVSDTI 970 >AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical protein W03F11.6e protein. Length = 1039 Score = 27.9 bits (59), Expect = 6.5 Identities = 14/55 (25%), Positives = 25/55 (45%) Frame = +3 Query: 291 SQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSV 455 S H ++ ++ QQ P+VRS + TT ++P G G + S ++ Sbjct: 914 SMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGDSFGSAVSDTI 968 >AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical protein W03F11.6d protein. Length = 1184 Score = 27.9 bits (59), Expect = 6.5 Identities = 14/55 (25%), Positives = 25/55 (45%) Frame = +3 Query: 291 SQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSV 455 S H ++ ++ QQ P+VRS + TT ++P G G + S ++ Sbjct: 914 SMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGDSFGSAVSDTI 968 >AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical protein W03F11.6c protein. Length = 1419 Score = 27.9 bits (59), Expect = 6.5 Identities = 14/55 (25%), Positives = 25/55 (45%) Frame = +3 Query: 291 SQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSV 455 S H ++ ++ QQ P+VRS + TT ++P G G + S ++ Sbjct: 914 SMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGDSFGSAVSDTI 968 >AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical protein W03F11.6a protein. Length = 1658 Score = 27.9 bits (59), Expect = 6.5 Identities = 14/55 (25%), Positives = 25/55 (45%) Frame = +3 Query: 291 SQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSV 455 S H ++ ++ QQ P+VRS + TT ++P G G + S ++ Sbjct: 914 SMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGDSFGSAVSDTI 968 >AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical protein Y57A10A.11 protein. Length = 458 Score = 27.5 bits (58), Expect = 8.6 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Frame = +3 Query: 354 PPPPLVRSTANTT--TMNVPPQVTGTMNGHSTSQSVDTRKRLTPIPDINTTGN 506 PPPP + TT T T T + +T T+ T P TTG+ Sbjct: 119 PPPPKTEAPTTTTKKTTTTTTTTTTTTSTTTTEAPTTTKTTTTRRPSTTTTGS 171 >AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on autosome protein2 protein. Length = 1758 Score = 27.5 bits (58), Expect = 8.6 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Frame = +3 Query: 213 SGSSGGAGGRPVQHXXXXXXXGFPHKSQHQRNVQFPNSALTMAMG--QQPPPPLVRSTAN 386 +GS+ G G + Q + H +N Q S T Q+PPPP ++ Sbjct: 70 TGSTNGGGQQ--QMTSMYGGNDYDQHQLHHQNQQHQASTSTQQFHHPQRPPPPQYDQPSS 127 Query: 387 TTTMNVPP 410 +T ++PP Sbjct: 128 STGSSLPP 135 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,956,608 Number of Sequences: 27780 Number of extensions: 360492 Number of successful extensions: 1531 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1350 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1522 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1416829972 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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