Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00255
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.35 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.3  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 420 GTMNGHSTSQSVDTRKRLTPIP 485
           G++NG+ +S   D RK+  P P
Sbjct: 159 GSLNGYGSSDGCDARKKKGPTP 180


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/71 (22%), Positives = 27/71 (38%)
 Frame = +3

Query: 282 PHKSQHQRNVQFPNSALTMAMGQQPPPPLVRSTANTTTMNVPPQVTGTMNGHSTSQSVDT 461
           P  S+       P   L+ A+  QPPP    S  +  +M+       +  G     S   
Sbjct: 356 PKSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGA 415

Query: 462 RKRLTPIPDIN 494
              + PIP+++
Sbjct: 416 --PMPPIPNMS 424



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 429 NGHSTSQSVDTRKRLTPIPDINTTGNQ 509
           +GH + Q  D  + L+  PDI T  +Q
Sbjct: 706 HGHDSGQDEDMAEDLSMAPDIMTPEDQ 732


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -1

Query: 301 WCCDLCGNPXXXXXXACCTG 242
           WCCD  G P         TG
Sbjct: 14  WCCDNLGGPGSSSAGGVVTG 33


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 541 KHNGALHQFEALPVHGAADD 600
           KH    H  EA P H  + D
Sbjct: 271 KHEAGSHSCEACPAHSKSSD 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,113
Number of Sequences: 438
Number of extensions: 4445
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)