Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00253
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    75   1e-14
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    31   0.17 
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    27   3.7  

>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 27/41 (65%), Positives = 34/41 (82%)
 Frame = +2

Query: 620 NRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRP 742
           N+Q WED +FP +C+ CLGDN Y+RMTKE  G+ECKICS+P
Sbjct: 10  NKQEWEDVEFPSICERCLGDNSYVRMTKEPLGQECKICSKP 50


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 21/65 (32%), Positives = 39/65 (60%)
 Frame = -2

Query: 493 VFTGAEFGTRISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVLALSMTSAAPEPRWKIF 314
           +FTG E   R++    VS + P ++ K+T    +I+ F+FALV+++++   A    W+  
Sbjct: 545 IFTGEESKIRMNAVRNVSVKAP-SMQKVTN---RIVIFIFALVVSMAIYCTAAYFVWQ-- 598

Query: 313 KKIEK 299
           KK+E+
Sbjct: 599 KKVER 603


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 522 ERSVLFDRLSCVESKIISRKD---TPWLHRS 605
           +R+VLFDRLS V+ +++        PWL ++
Sbjct: 33  KRAVLFDRLSGVQKQVVQEGTHFLIPWLQKA 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,305
Number of Sequences: 5004
Number of extensions: 56797
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)