Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00253
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145...    71   7e-13
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353...    71   7e-13
05_07_0285 + 28982502-28982782,28982888-28982989,28983189-289840...    30   2.2  
11_05_0103 - 19083663-19083856,19083962-19084169,19084239-190843...    28   6.8  
11_04_0009 - 12132781-12133272                                         28   6.8  
04_04_0617 - 26642602-26642637,26643307-26643565,26644610-266447...    28   6.8  
03_06_0498 - 34341441-34341575,34341808-34341945,34342019-343421...    28   6.8  

>07_01_1143 -
           10711023-10711884,10713603-10713826,10714253-10714522,
           10715071-10715175
          Length = 486

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 25/37 (67%), Positives = 33/37 (89%)
 Frame = +2

Query: 632 WEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRP 742
           WE +DFPI+C++CLGDNPY+RM + +Y KECKIC+RP
Sbjct: 14  WERSDFPIICESCLGDNPYVRMLRAEYDKECKICARP 50


>06_01_0493 -
           3536207-3537056,3537603-3537826,3538234-3538503,
           3539042-3539146
          Length = 482

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 25/37 (67%), Positives = 33/37 (89%)
 Frame = +2

Query: 632 WEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRP 742
           WE +DFPI+C++CLGDNPY+RM + +Y KECKIC+RP
Sbjct: 14  WERSDFPIICESCLGDNPYVRMLRAEYDKECKICARP 50


>05_07_0285 +
           28982502-28982782,28982888-28982989,28983189-28984006,
           28984594-28985050,28985203-28985242
          Length = 565

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 572 IKKGHAMATSKSTNTYNRQNWEDADFPILCQTCLGD 679
           I KG  +AT+ +TN Y RQ +++    I  Q C  D
Sbjct: 148 ITKGGILATTATTNLYRRQRYKEGMKDIQSQCCSPD 183


>11_05_0103 -
           19083663-19083856,19083962-19084169,19084239-19084323,
           19084591-19084865
          Length = 253

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 664 LAQYWKIGVFPILTIVCVC*LRCSHGVSFLDIILDSTQLNLSNKTLLSHFYM 509
           + + W  G+  +L +  V  LR SHGV+    I++    N SNK+  SH  M
Sbjct: 202 ITKVWNGGLRRLLGLRPVTSLRGSHGVNVTGEIVEPEADNKSNKSSGSHGLM 253


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 316 RSSTWAREQRWSCSKPAPERRRRIGSLR 399
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


>04_04_0617 -
           26642602-26642637,26643307-26643565,26644610-26644796,
           26644981-26645044
          Length = 181

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = +1

Query: 205 RFKDYFPMALAEP-RTSMPGPL*RCRHECSCPFFQFS*RSSTWAREQRWSCSKPAPER 375
           R   Y P  +  P R ++     R  H   CPF      SS W    R+ C +   ER
Sbjct: 107 RSSSYHPNPVRSPVRKALARYTCRPLHPARCPFGPGPGGSSRWTGRMRYQCGRQRDER 164


>03_06_0498 -
           34341441-34341575,34341808-34341945,34342019-34342117,
           34342320-34342400,34342548-34342610,34342717-34342764,
           34343033-34343410,34345413-34345537,34345635-34345701,
           34345797-34345856,34346495-34346621,34346670-34346986
          Length = 545

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 373 ALVLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPASRS 245
           A+++A+ M +  P PRW + + ++    ++ D   KA  A RS
Sbjct: 259 AVIMAIGMWNLPPSPRWLLLRAVQGKA-SVEDNKKKAIQALRS 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,827,194
Number of Sequences: 37544
Number of extensions: 351100
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)