Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00253
         (743 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003402-1|AAH03402.1|  420|Homo sapiens RNA binding motif prote...   111   3e-24
AK001152-1|BAA91521.1|  420|Homo sapiens protein ( Homo sapiens ...   111   3e-24

>BC003402-1|AAH03402.1|  420|Homo sapiens RNA binding motif protein
           22 protein.
          Length = 420

 Score =  111 bits (267), Expect = 3e-24
 Identities = 46/51 (90%), Positives = 49/51 (96%)
 Frame = +2

Query: 590 MATSKSTNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRP 742
           MATS  +NTYNRQNWEDADFPILCQTCLG+NPYIRMTKEKYGKECKIC+RP
Sbjct: 1   MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARP 51


>AK001152-1|BAA91521.1|  420|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10290 fis, clone MAMMA1002385, weakly similar to
           RIBONUCLEOPROTEIN RB97D. ).
          Length = 420

 Score =  111 bits (267), Expect = 3e-24
 Identities = 46/51 (90%), Positives = 49/51 (96%)
 Frame = +2

Query: 590 MATSKSTNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRP 742
           MATS  +NTYNRQNWEDADFPILCQTCLG+NPYIRMTKEKYGKECKIC+RP
Sbjct: 1   MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARP 51


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,771,095
Number of Sequences: 237096
Number of extensions: 1906233
Number of successful extensions: 2824
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2824
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)