Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00253
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical pr...    93   2e-19
U80452-13|AAB37850.1|  139|Caenorhabditis elegans Hypothetical p...    28   8.0  

>Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical
           protein T11G6.8 protein.
          Length = 408

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 37/52 (71%), Positives = 47/52 (90%), Gaps = 1/52 (1%)
 Frame = +2

Query: 590 MATSKST-NTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRP 742
           M+ SKS+ + YNR+NWED+DFPILC+TCLG+NPY+RM K+KYG+ECKIC RP
Sbjct: 1   MSMSKSSYSQYNRKNWEDSDFPILCETCLGNNPYMRMMKDKYGRECKICERP 52


>U80452-13|AAB37850.1|  139|Caenorhabditis elegans Hypothetical
           protein C16C8.8 protein.
          Length = 139

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 586 VSFLDIILDSTQLNLSNKTLLSHFYMN*ITKVFTGAEFGTRIST 455
           V  +D +L S+  NLS+K ++  FY    TK+      G  I+T
Sbjct: 51  VRVMDSLLLSSNENLSSKNMIREFYKYPNTKIHDARFVGRNIAT 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,842,451
Number of Sequences: 27780
Number of extensions: 320921
Number of successful extensions: 664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)