Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00253
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ...    75   5e-14
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    75   5e-14
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ...    73   2e-13
At4g07510.1 68417.m01165 hypothetical protein                          29   3.3  

>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}; contains Pfam profile:
           PF00076 RNA recognition motif (aka RRM, RBD, or RNP
           domain)
          Length = 483

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +2

Query: 617 YNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRP 742
           +    WE +DFPI+C++CLGDNPY+RMTK  Y KECKIC+RP
Sbjct: 9   HEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRP 50


>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +2

Query: 617 YNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRP 742
           +    WE +DFPI+C++CLGDNPY+RMTK  Y KECKIC+RP
Sbjct: 9   HEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRP 50


>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 363

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = +2

Query: 605 STNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRP 742
           S   +    WE ADFPI C++C GDNPY+RMT+  Y KECKICSRP
Sbjct: 2   SHRDHGADGWESADFPITCESCFGDNPYMRMTRADYDKECKICSRP 47


>At4g07510.1 68417.m01165 hypothetical protein 
          Length = 312

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 584 HAMATSKSTNTYNRQNWEDADFPILCQ 664
           H + T K T T  + NW+D    +LCQ
Sbjct: 198 HTLWTRKFTRTREKFNWKDLSLLVLCQ 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,696,323
Number of Sequences: 28952
Number of extensions: 291116
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)