Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00252
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 140 2e-34
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 43 4e-05
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 32 0.074
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 6.4
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 8.5
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 8.5
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.5
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 140 bits (339), Expect = 2e-34
Identities = 65/89 (73%), Positives = 77/89 (86%)
Frame = +2
Query: 248 LEDIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQI 427
L ++QAEE+VEFSSG+KGMALNLE D VG V+FGND+L++EG++VKRT IVDVPVGE +
Sbjct: 72 LSNVQAEELVEFSSGIKGMALNLEADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEAL 131
Query: 428 LGRVVDALGNPIDGKGPIDTKSRMRVGLR 514
LGRVVDALGNPIDGKGPI T R RV L+
Sbjct: 132 LGRVVDALGNPIDGKGPIKTTERRRVQLK 160
Score = 128 bits (309), Expect = 8e-31
Identities = 56/78 (71%), Positives = 68/78 (87%)
Frame = +1
Query: 505 RFKAPIIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRF 684
+ KAP I+PR SV EPMQTG+KA+DS+VPIGRGQRELIIGDRQTGKTA+A+DTI+N +R+
Sbjct: 158 QLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILNHKRW 217
Query: 685 NKGEDEKKKLYCIYVVIG 738
N DE KKLYC+YV +G
Sbjct: 218 NNSSDESKKLYCVYVAVG 235
Score = 52.0 bits (119), Expect = 9e-08
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3
Query: 138 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGL 251
E+ +ILEERI GA +A + E+GRVLSIGDGIAR+ GL
Sbjct: 35 EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGL 72
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +2
Query: 335 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPI 481
+ + G + L++ G V TG+ + +PVG LGR+++ +G P+D +GPI
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPI 155
Score = 34.7 bits (76), Expect = 0.014
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 514 APIIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 693
AP + + E ++TGIK VD L P RG + + G GKT + I N + + G
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGG 226
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 32.3 bits (70), Expect = 0.074
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 389 TGAIVDVPVGEQILGRVVDALGNPIDGKGP 478
TG + +PV E +LGRV + G PID KGP
Sbjct: 92 TGHSMRIPVSEDMLGRVFNGSGLPID-KGP 120
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 532 RVSVREPMQTGIKAVDSLVPIGRGQR 609
R+ E +QTGI ++D L I RGQ+
Sbjct: 140 RIYPEEMIQTGISSIDGLNSIARGQK 165
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/42 (21%), Positives = 20/42 (47%)
Frame = -1
Query: 264 AWMSSSHKHERYHHQCSRHDQSLLDQPWARLQGSSLRGWWRS 139
++ S +H +Y H D L++ +A+ + + W R+
Sbjct: 668 SYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEWLRT 709
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 526 IPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 675
IP V + + V + +G G +I+G R +GK+ L +D I+++
Sbjct: 550 IPLVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVL-VDDILSR 598
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 438 TRPRICSPTGTSTIAP 391
TRPR+ +P+ +ST+ P
Sbjct: 55 TRPRVSAPSSSSTVVP 70
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 97 HLANYMSQPPTKLPRSPPSSKRGSLEP 177
H +Y+S P SPP+SK S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,859
Number of Sequences: 5004
Number of extensions: 64031
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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