Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00252
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 38 0.011
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 37 0.015
12_01_0899 - 8689125-8689383,8689540-8689826 31 0.72
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814... 31 1.3
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 31 1.3
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 30 1.7
04_04_0521 - 25880616-25882362,25883036-25883412 30 1.7
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 30 2.2
04_04_0946 - 29579779-29580004,29580098-29580210 30 2.2
06_03_1070 - 27351781-27351882,27352461-27352520,27353033-273531... 29 2.9
05_03_0313 + 12200743-12200955,12201238-12201622,12201997-122022... 29 2.9
12_02_0305 - 17235832-17236379,17237345-17237444 29 3.9
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 29 5.1
12_02_0396 + 18577574-18578056,18578094-18578723 28 6.7
07_01_0711 + 5374717-5374992,5375022-5375277,5375317-5375384,537... 28 6.7
09_04_0296 + 16461482-16461544,16462087-16463097 28 8.9
08_02_0361 - 16205476-16205727 28 8.9
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729... 28 8.9
04_01_0319 - 4291144-4293402 28 8.9
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 8.9
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 37.5 bits (83), Expect = 0.011
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 296 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 472
+G L ++ + V VF G + + V+ TG ++ PV +LGRV + G PID
Sbjct: 57 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNG 116
Query: 473 GPI 481
PI
Sbjct: 117 PPI 119
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 296 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 472
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 97 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 156
Query: 473 GPI 481
PI
Sbjct: 157 PPI 159
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 58 PRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKRGSLEPRPRL 189
P C R P+ PW +A +PP PP+ G+ RP L
Sbjct: 38 PPCARLLLPEPPWGMAALPPEPPWGAAAHPPAPHWGAGPSRPAL 81
>03_06_0376 +
33479776-33479958,33481055-33481236,33481345-33481469,
33481858-33482057,33482629-33482762,33483095-33483158,
33483764-33484441,33484723-33484839
Length = 560
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 472 LAINRVSQSVYYTPKDLLSDGNVYDSTSTLDNISFFD 362
L +N + Y+ PKDL S + Y T+ D I++FD
Sbjct: 136 LLVNETTMVRYWGPKDLSSLVDFYKETTGFDPIAYFD 172
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 55 LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKR 162
+PR + WR P LA + QP K P S P SK+
Sbjct: 412 MPRNRYWRTPVKSPVLAKKLEQPAQKRPSSAPKSKK 447
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 55 LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKRG 165
+P+ + WR P + + QP K P SPP SK+G
Sbjct: 635 MPKNRYWRTPVKSPVPSMKLEQPAQKKPSSPPKSKKG 671
>04_04_0521 - 25880616-25882362,25883036-25883412
Length = 707
Score = 30.3 bits (65), Expect = 1.7
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Frame = -3
Query: 424 LLSDGNVYDSTSTLDNISFFDKLVITKYYHTHIVRFQVKGH--SLEA*GELHHLLSLDVF 251
+L D NV S + + F + + Y H+ ++K H S+EA + H+L+ F
Sbjct: 263 VLYDANVLAVLSEVLSAVFCEVMNGKPEYTDHLTH-KLKHHPGSIEAAAIMEHILAGSAF 321
Query: 250 KP*TRAI--PSPMLKTRPVSSRSALGAAPRILSSRMVEISAALWVVE 116
P + + P+LK P R AL +P+ L ++ I AA +E
Sbjct: 322 MPHAQKVNEVDPLLK--PKQDRYALRTSPQWLGPQIEVIRAATKSIE 366
>08_01_0722 +
6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 55 LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKRGSLEP 177
+PR + WR P P A + Q K P SPP K+ + P
Sbjct: 552 MPRNRYWRLPVKPPIPAKKLEQLAQKKPPSPPKPKKPKVGP 592
>04_04_0946 - 29579779-29580004,29580098-29580210
Length = 112
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 246 HKHERYHHQCSRHDQSLLDQPWARLQGSSLR 154
H H R+HHQ + ++ PW +G +LR
Sbjct: 81 HHHHRHHHQQPQPRPAIDANPWGTARGPALR 111
>06_03_1070 -
27351781-27351882,27352461-27352520,27353033-27353142,
27353583-27353693,27353781-27353939,27354035-27354158,
27354755-27354812,27356656-27356933
Length = 333
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 335 HPHCQVPS*GPFP*GLRRTPPSPQPGCLQAINTSDTITN 219
HP+ Q S P + + PP + GC+ +++TS I N
Sbjct: 144 HPYPQKASKNVSPAAISQPPPLGEQGCVMSMDTSPVIRN 182
>05_03_0313 +
12200743-12200955,12201238-12201622,12201997-12202274,
12202359-12202976
Length = 497
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 55 LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKR 162
+P+ + W+ P P LA + QP K P S P K+
Sbjct: 440 MPKNRYWKMPVEPPILAKKLEQPAQKKPPSAPKPKK 475
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 115 SQPPTKLPRSPPSSKRGSLEPRPRLI 192
SQPPT P PP+ GS PR +I
Sbjct: 114 SQPPTIAPTQPPTPSGGSQCPRENVI 139
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/75 (29%), Positives = 30/75 (40%)
Frame = -2
Query: 344 ILPHPHCQVPS*GPFP*GLRRTPPSPQPGCLQAINTSDTITNAQDTTSLF*ISLGRGSKD 165
+L H C+ S P P +RT P P P C + + + + S SL S D
Sbjct: 166 VLEHHPCENFSFFPPPIDRKRTGPRPCPVCYVPVEQALALMPGAPSASPVLRSLNYLSGD 225
Query: 164 PLFEDGGDLGSFVGG 120
L + GS GG
Sbjct: 226 NLISKESNHGSLFGG 240
>12_02_0396 + 18577574-18578056,18578094-18578723
Length = 370
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 55 LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKR 162
+PR + WR P P A + QP + P S P K+
Sbjct: 313 MPRNRYWRTPVKPSTPAKKLEQPAQRKPPSAPKPKK 348
>07_01_0711 +
5374717-5374992,5375022-5375277,5375317-5375384,
5375556-5376287,5377013-5377270
Length = 529
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 55 LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKRGS 168
+PR + W+ P A + QP + P S P K+GS
Sbjct: 409 MPRNRYWKTPVKSSTPAKKLEQPAQRKPSSAPKPKKGS 446
>09_04_0296 + 16461482-16461544,16462087-16463097
Length = 357
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 281 TPPSPQPGCLQAINTSDTITNAQDTTSL 198
+PP PQP C+ A T+ + T A + S+
Sbjct: 254 SPPVPQPPCMSAAATTTSNTKASERRSV 281
>08_02_0361 - 16205476-16205727
Length = 83
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 180 ARLQGSSLRGWWRSRQLCGWL 118
A L G + WWR R GWL
Sbjct: 12 ASLGGGGVELWWRRRSAAGWL 32
>05_03_0577 +
15671570-15672432,15672571-15672785,15672825-15672954,
15672990-15673794,15674505-15674715,15674829-15675436
Length = 943
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 52 LLPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKRGS 168
++PR + W+ P P A + Q K P S P ++GS
Sbjct: 635 MMPRNRYWKTPVKPPIPAKKLEQSAQKKPPSAPKPRKGS 673
>04_01_0319 - 4291144-4293402
Length = 752
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Frame = -1
Query: 177 RLQGSSLRGWWRSRQL-----CGWLRH-VVC 103
R SS G+W R+L CGW+RH V+C
Sbjct: 339 RALASSWTGFWLDRELRPVWGCGWIRHEVLC 369
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 GACLMLLPRCQRWRYPQWPWHLANYMSQPPTKL-PRSPPSSKRGSLEPRPR 186
G+ ++ +PR +R W A ++ PP + P+ P R +P PR
Sbjct: 149 GSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMAPQPPRGGPRQRYQPTPR 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,759,012
Number of Sequences: 37544
Number of extensions: 503389
Number of successful extensions: 1694
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1689
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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