Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00252
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)             125   3e-29
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                48   8e-06
SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)                 31   0.97 
SB_41984| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_5568| Best HMM Match : MBOAT (HMM E-Value=0.00049)                  29   3.0  
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 29   3.9  
SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)                    29   3.9  
SB_50716| Best HMM Match : WD40 (HMM E-Value=0)                        29   5.2  
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     29   5.2  
SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score =  125 bits (302), Expect = 3e-29
 Identities = 66/87 (75%), Positives = 70/87 (80%), Gaps = 11/87 (12%)
 Frame = +1

Query: 511 KAPIIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNK 690
           KAP IIPR SV+EPM TGIKAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIINQ+RFN 
Sbjct: 70  KAPGIIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFND 129

Query: 691 GEDE-----------KKKLYCIYVVIG 738
           G DE           +KKLYCIYV IG
Sbjct: 130 GVDEIDILNTRGLFLEKKLYCIYVAIG 156



 Score =  124 bits (300), Expect = 6e-29
 Identities = 60/71 (84%), Positives = 66/71 (92%)
 Frame = +2

Query: 302 MALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPI 481
           MALNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE++LGRVVDALGNPIDGKGP 
Sbjct: 1   MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPT 60

Query: 482 DTKSRMRVGLR 514
              +R RVG++
Sbjct: 61  G-GTRARVGVK 70


>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 20/57 (35%), Positives = 35/57 (61%)
 Frame = +2

Query: 335 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRV 505
           + + G + LI+ G     TG  + +PVG + LGR+++ +G PID +GP++T  R  +
Sbjct: 124 IAMDGTEGLIR-GQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAI 179



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = +1

Query: 511 KAPIIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNK 690
           +AP  +   + +E ++TGIK VD L P  +G +  + G    GKT L ++ I N  + + 
Sbjct: 182 EAPEFVEMSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 241

Query: 691 G 693
           G
Sbjct: 242 G 242


>SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)
          Length = 263

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 424 DPWACSRRFGKPY*WQGTNRHEIPYEGRFK 513
           D  ACSR  G    W G++ +EIPY G +K
Sbjct: 83  DTSACSRIAGNTGYWDGSDTNEIPYFGAWK 112


>SB_41984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -1

Query: 276 TISSAWMSSSHKHERYHH---QCSRHDQSLL 193
           T+SS+  SSS    RYHH   +C RH QS +
Sbjct: 26  TLSSSSSSSSSSSSRYHHHRRRCLRHHQSYI 56


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 427  DLLSDGNVYDSTSTLDNISFFDKLVITKYYHTHIVRF 317
            D LSDG+    ++T  N  F D+++   + HT+I RF
Sbjct: 1175 DALSDGS---KSNTSGNYGFMDQIMALSWIHTNIARF 1208


>SB_14021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 240 HERY-HHQCSRHDQSLLD 190
           HERY HHQ +RHD   LD
Sbjct: 157 HERYQHHQTTRHDDQTLD 174


>SB_5568| Best HMM Match : MBOAT (HMM E-Value=0.00049)
          Length = 282

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +3

Query: 273 WWSSPQASREWPLTWNLTM--WVW*YLV--MTSLSKKEILSSVLV 395
           WW++P  + +W  TWN+ +  W++ Y+   +  L+    LS+V V
Sbjct: 129 WWNAPSYA-DWYRTWNVVVHDWLYTYIYKDLVQLTNNRNLSTVAV 172


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 559 TGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 672
           TGIK +D + P  +G +  + G    GKT L I  +IN
Sbjct: 5   TGIKVIDLIEPYAKGGKIGLFGGAGVGKTVL-IQELIN 41


>SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)
          Length = 1250

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 267 RRWWSSPQASREWPLTWNLTMWVW*YLVMTSLSKKEI 377
           RRW S P     WP   N  +WV  Y     +SK  +
Sbjct: 64  RRWLSEPSYGY-WPQQLNFAVWVHVYFTTRRISKNSV 99


>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 494

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 585 QRVNSLDTSLHRLTHRHTGNDNXRLKPTLIRDFVSIGP 472
           ++V  ++  L R+ H   G+ N  LKP L RDF++  P
Sbjct: 37  EQVQFVEYLLSRMCHFQHGHVNAFLKPMLQRDFITALP 74


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 285  ENSTISSAWMSSSHKHERYHHQCSRHDQSLLDQPWAR 175
            ENST++ A      K ERYH    R  ++++   W R
Sbjct: 1015 ENSTLAIAREELVEKLERYHDHVERVSETMVTTAWKR 1051


>SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 278 EFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRV 439
           ++   +K +   ++P   G+VV G D  + E D+ K    I+ V        RV
Sbjct: 36  DYEGQIKKLMQYIDPSLDGIVVAGGDGTLLEADVSKIPIGIIPVGTNNTFFNRV 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,052,470
Number of Sequences: 59808
Number of extensions: 530567
Number of successful extensions: 1839
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1829
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)