Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00252
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 146 1e-35
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 146 1e-35
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 135 4e-32
AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical ... 68 8e-12
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 46 3e-05
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 40 0.002
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 34 0.091
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 32 0.49
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 32 0.49
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 29 2.6
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p... 29 4.5
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 29 4.5
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 7.9
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 7.9
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 28 7.9
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 28 7.9
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 7.9
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 7.9
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 146 bits (354), Expect = 1e-35
Identities = 69/89 (77%), Positives = 80/89 (89%)
Frame = +2
Query: 248 LEDIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQI 427
L++IQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG+ +
Sbjct: 45 LKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGL 104
Query: 428 LGRVVDALGNPIDGKGPIDTKSRMRVGLR 514
LGRVVDALGNPIDGKGPI R RV ++
Sbjct: 105 LGRVVDALGNPIDGKGPIANARRSRVEVK 133
Score = 135 bits (326), Expect = 4e-32
Identities = 63/76 (82%), Positives = 70/76 (92%)
Frame = +1
Query: 511 KAPIIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNK 690
KAP IIPR+SVREPM TG+KAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIINQ+RFN
Sbjct: 133 KAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFND 192
Query: 691 GEDEKKKLYCIYVVIG 738
D+KKKL+CIYV +G
Sbjct: 193 AGDDKKKLFCIYVAVG 208
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +3
Query: 135 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLK 254
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLK
Sbjct: 7 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLK 46
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 146 bits (354), Expect = 1e-35
Identities = 69/89 (77%), Positives = 80/89 (89%)
Frame = +2
Query: 248 LEDIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQI 427
L++IQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG+ +
Sbjct: 72 LKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGL 131
Query: 428 LGRVVDALGNPIDGKGPIDTKSRMRVGLR 514
LGRVVDALGNPIDGKGPI R RV ++
Sbjct: 132 LGRVVDALGNPIDGKGPIANARRSRVEVK 160
Score = 135 bits (326), Expect = 4e-32
Identities = 63/76 (82%), Positives = 70/76 (92%)
Frame = +1
Query: 511 KAPIIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNK 690
KAP IIPR+SVREPM TG+KAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIINQ+RFN
Sbjct: 160 KAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFND 219
Query: 691 GEDEKKKLYCIYVVIG 738
D+KKKL+CIYV +G
Sbjct: 220 AGDDKKKLFCIYVAVG 235
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +3
Query: 135 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLK 254
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLK
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLK 73
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 135 bits (326), Expect = 4e-32
Identities = 63/76 (82%), Positives = 70/76 (92%)
Frame = +1
Query: 511 KAPIIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNK 690
KAP IIPR+SVREPM TG+KAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIINQ+RFN
Sbjct: 125 KAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFND 184
Query: 691 GEDEKKKLYCIYVVIG 738
D+KKKL+CIYV +G
Sbjct: 185 AGDDKKKLFCIYVAVG 200
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +3
Query: 135 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLK 254
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLK
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLK 73
Score = 60.1 bits (139), Expect(2) = 2e-13
Identities = 27/35 (77%), Positives = 32/35 (91%)
Frame = +2
Query: 248 LEDIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGN 352
L++IQAEEMVEF SG+KGMA+NL+ DNVGVVV GN
Sbjct: 72 LKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVLGN 106
Score = 33.1 bits (72), Expect(2) = 2e-13
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 440 VDALGNPIDGKGPIDTKSRMRVGLR 514
V LGNPIDGKGPI R RV ++
Sbjct: 101 VVVLGNPIDGKGPIANARRSRVEVK 125
>AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical
protein H28O16.1b protein.
Length = 146
Score = 67.7 bits (158), Expect = 8e-12
Identities = 30/38 (78%), Positives = 36/38 (94%)
Frame = +2
Query: 248 LEDIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKL 361
L++IQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+
Sbjct: 72 LKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKI 109
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +3
Query: 135 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLK 254
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLK
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLK 73
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +2
Query: 335 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKS 493
+ + G + L++ G V TG + +PVG + LGR+++ +G PID +GPI +K+
Sbjct: 120 IAMDGTEGLVR-GQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKN 171
Score = 36.3 bits (80), Expect = 0.023
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 511 KAPIIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNK 690
+AP + +E + TGIK VD L P +G + + G GKT L ++ I N + +
Sbjct: 178 EAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 237
Query: 691 G 693
G
Sbjct: 238 G 238
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 299 GMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKG 475
G L + + V VF G + + I + TG I+ PV E +LGR+ + G PID KG
Sbjct: 66 GQVLEISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPID-KG 124
Query: 476 P 478
P
Sbjct: 125 P 125
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 532 RVSVREPMQTGIKAVDSLVPIGRGQR 609
R+ E +QTGI A+D + I RGQ+
Sbjct: 145 RIYPEEMIQTGISAIDVMNSIARGQK 170
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 34.3 bits (75), Expect = 0.091
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 293 LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPI 463
L G + LE D + V+ + GD V RTG + V +G I+G + D + P+
Sbjct: 39 LVGEIIRLEGDYATIQVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPL 95
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -1
Query: 588 YQRVNSLDTSLHRLTHRHTGNDNXRLKPTLIRDFVS 481
+++++ +D +HRL+H G + ++P L RDF+S
Sbjct: 50 HEQLDFMDKIVHRLSHYQLGKVDNFIRPMLQRDFIS 85
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -1
Query: 588 YQRVNSLDTSLHRLTHRHTGNDNXRLKPTLIRDFVS 481
+++++ +D +HRL+H G + ++P L RDF+S
Sbjct: 50 HEQLDFMDKIVHRLSHYQLGKVDNFIRPMLQRDFIS 85
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 389 TGAIVDVPVGEQILGRVVDALGNPIDGKGP 478
TG I PV +LGR+ + G PID KGP
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPID-KGP 137
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 532 RVSVREPMQTGIKAVDSLVPIGRGQR 609
R+ E +QTGI A+D + I RGQ+
Sbjct: 157 RIYPEEMIQTGISAIDVMNSIARGQK 182
>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 248 LEDIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPVGEQ 424
L ++Q+ + E G+K + +L + +DK LIK G I+ + I VP+
Sbjct: 634 LPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPIDTS 693
Query: 425 ILGR-VVDAL 451
++G+ VV AL
Sbjct: 694 LIGKSVVPAL 703
>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 248 LEDIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPVGEQ 424
L ++Q+ + E G+K + +L + +DK LIK G I+ + I VP+
Sbjct: 634 LPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPIDTS 693
Query: 425 ILGR-VVDAL 451
++G+ VV AL
Sbjct: 694 LIGKSVVPAL 703
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -3
Query: 502 PHTGFRVDWSLAINRVSQSVYYTPKDLLSDGNVYDS---TSTLDN-ISFFDKLVITKYYH 335
P+ DW++ I + S+ +Y+T LL+ D T T +N F K V +YY
Sbjct: 87 PNANRHADWAIQIKKPSKYLYHTSFALLAAFAHRDQIIVTLTSENQFKFVFKTVYCRYYD 146
Query: 334 TH 329
H
Sbjct: 147 CH 148
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 208 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 32
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 208 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 32
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 208 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 32
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 208 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 32
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 208 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 32
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 208 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 32
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,200,107
Number of Sequences: 27780
Number of extensions: 374222
Number of successful extensions: 1264
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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