Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00252
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.2  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   5.2  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   5.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   6.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.1  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 439 YTPKDLLSDGNVYDSTSTLDNISFF 365
           YTP+ L   GNV + +S   N  F+
Sbjct: 356 YTPEGLNMLGNVIEGSSDSINTKFY 380


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 171 GAAPKADLEETGRVLSIGDGIARVYGLKTSRL 266
           GA P+   EET ++  +   I R Y  + S++
Sbjct: 78  GACPQCSPEETRQIKKVLSHIQRTYPKEWSKI 109


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 171 GAAPKADLEETGRVLSIGDGIARVYGLKTSRL 266
           GA P+   EET ++  +   I R Y  + S++
Sbjct: 78  GACPQCSPEETRQIKKVLSHIQRTYPKEWSKI 109


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 439 YTPKDLLSDGNVYDSTSTLDNISFF 365
           YTP+ L   GNV +  S   N  F+
Sbjct: 356 YTPEGLNMLGNVIEGNSDSINTKFY 380


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 442 YYTPKDLLSDGNVYDSTSTLDNISFFDK 359
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 346 FYHPEDLPFIKDIYETVIKLEGASFRSK 373


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 442 YYTPKDLLSDGNVYDSTSTLDNISFFDK 359
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 52  FYHPEDLPFIKDIYETVIKLEGASFRSK 79


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 5/7 (71%), Positives = 5/7 (71%)
 Frame = +1

Query: 79  YPQWPWH 99
           YP W WH
Sbjct: 231 YPNWEWH 237


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -2

Query: 338 PHPHCQVPS*GPFP*GLRRTPPSPQPGCLQAINTS 234
           PH   Q P  G  P   +  PP   PG   + N S
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,309
Number of Sequences: 438
Number of extensions: 5106
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)