Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00251
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 1e-16
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 83 2e-16
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 58 7e-09
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 58 7e-09
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 56 2e-08
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 49 4e-06
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 42 5e-04
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 37 0.015
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 28 8.9
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/49 (77%), Positives = 41/49 (83%)
Frame = -3
Query: 648 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSCWM 502
GKSIYG KF DENF LKHTGPG+LSMANAG TNGSQFF+ T KTS W+
Sbjct: 74 GKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTS-WL 121
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = -2
Query: 508 LDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 380
LDG+HVVFG+V +GM+VVK+IE GS SGKTSK++VI D +
Sbjct: 121 LDGKHVVFGSVKDGMDVVKKIEKVGSDSGKTSKKVVIADSASV 163
Score = 36.7 bits (81), Expect = 0.019
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -2
Query: 727 YKGSIFHRVIPNFMLQGG 674
YKGS FHRVIP FM QGG
Sbjct: 47 YKGSSFHRVIPGFMCQGG 64
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 83.0 bits (196), Expect = 2e-16
Identities = 38/49 (77%), Positives = 42/49 (85%)
Frame = -3
Query: 648 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSCWM 502
GKSIYG KFEDENF LKHTG GVLSMAN+G +TNGSQFF+TT KT W+
Sbjct: 208 GKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTD-WL 255
Score = 70.5 bits (165), Expect = 1e-12
Identities = 28/44 (63%), Positives = 39/44 (88%)
Frame = -2
Query: 508 LDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 377
LDG+HVVFGNV+EG +VV+++E GSQSGK SK++VI DCG+++
Sbjct: 255 LDGKHVVFGNVIEGFDVVRKMEAVGSQSGKASKKVVIDDCGELS 298
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = -2
Query: 727 YKGSIFHRVIPNFMLQGG 674
YKGS FHR+IP FM QGG
Sbjct: 181 YKGSSFHRIIPQFMCQGG 198
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 725 QGLHFPSCHPQFHAARRDFTNHNGTGG 645
+G F PQF DFT HNGTGG
Sbjct: 182 KGSSFHRIIPQFMCQGGDFTKHNGTGG 208
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 80.2 bits (189), Expect = 2e-15
Identities = 40/60 (66%), Positives = 43/60 (71%)
Frame = -3
Query: 648 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSCWMADMLSLGMLLK 469
GKSIYG KF DENF L+H G G LSMANAG DTNGSQFFITTVKT + G +LK
Sbjct: 116 GKSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLK 175
Score = 35.1 bits (77), Expect = 0.059
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -2
Query: 727 YKGSIFHRVIPNFMLQGG 674
YK SIFHRVI +FM+QGG
Sbjct: 89 YKNSIFHRVIQDFMIQGG 106
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -2
Query: 508 LDGRHVVFGNVVEGMEV 458
LDGRHVVFG V++GMEV
Sbjct: 163 LDGRHVVFGKVLKGMEV 179
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = -3
Query: 648 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSCWM 502
G SIYG F+DENF LKH GPG L MANAG +TNGSQF+ITT+KTS W+
Sbjct: 97 GYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTS-WL 144
Score = 36.7 bits (81), Expect = 0.019
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -2
Query: 727 YKGSIFHRVIPNFMLQGG 674
YK SIFHRVI NFM+QGG
Sbjct: 70 YKDSIFHRVIKNFMIQGG 87
Score = 35.1 bits (77), Expect = 0.059
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = -2
Query: 508 LDGRHVVFGNVVEGMEVVKQIE 443
LDG H FG V+EGM+VV++IE
Sbjct: 144 LDGSHTCFGKVLEGMDVVRRIE 165
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/50 (58%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = -3
Query: 648 GKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSCWM 502
G+SI+G +FEDE + L+H P +SMANAG +TNGSQFFIT V T W+
Sbjct: 6 GESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTP-WL 54
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 508 LDGRHVVFGNVVEGMEVVKQI 446
LD +H VFG VV+GM+V +QI
Sbjct: 54 LDNKHTVFGRVVKGMDVAQQI 74
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 58.0 bits (134), Expect = 7e-09
Identities = 26/49 (53%), Positives = 36/49 (73%)
Frame = -3
Query: 648 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSCWM 502
G+S+YG FEDE+F++ H GV+ MAN G TNGSQF+I T++ + WM
Sbjct: 49 GESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYI-TLQPAPWM 96
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 508 LDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCG 386
+D ++V FG V+EG+ V+ +E + + + + DCG
Sbjct: 96 MDTKYVAFGQVIEGLNVLDVLEGQETFNERPKVECRVADCG 136
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/43 (62%), Positives = 30/43 (69%)
Frame = -3
Query: 648 GKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTV 520
G+SIYG F DE F KH P +LSMAN G +TNGSQFFI V
Sbjct: 29 GESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/40 (35%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = -2
Query: 496 HVVFGNVVEGMEVVKQIETF-GSQSGKTSKRIVIKDCGQI 380
HVVFG+V++G E+V+QIE+ ++ + + + + +CG++
Sbjct: 70 HVVFGHVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 109
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/44 (54%), Positives = 30/44 (68%)
Frame = -3
Query: 600 KHTGPGVLSMANAGADTNGSQFFITTVKTSCWMADMLSLGMLLK 469
+H PG+LSMAN+G +TNGSQFFITTV T + G +LK
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLK 231
Score = 48.4 bits (110), Expect = 6e-06
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = -2
Query: 508 LDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 377
LDGRHVVFG V++GM+VV+++E +I++CG++A
Sbjct: 219 LDGRHVVFGKVLKGMDVVRELEATPVDDSSPKSPCIIEECGELA 262
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3
Query: 573 MANAGADTNGSQFFITTVKTSCWM 502
MANAG DTNGSQFFITTVKTS W+
Sbjct: 1 MANAGKDTNGSQFFITTVKTS-WL 23
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = -2
Query: 508 LDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 380
LDG+HVVFG V+EGM+VV+++E + K +I D G +
Sbjct: 23 LDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVKTCMIDDSGTL 65
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -3
Query: 582 VLSMANAGADTNGSQFFITTVKTSCWM 502
+LSMANAG TNGSQFF+ T KTS W+
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTS-WL 27
Score = 35.9 bits (79), Expect = 0.034
Identities = 14/21 (66%), Positives = 20/21 (95%)
Frame = -2
Query: 508 LDGRHVVFGNVVEGMEVVKQI 446
LDG+HVVFG+V +GM+VVK++
Sbjct: 27 LDGKHVVFGSVKDGMDVVKKM 47
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/40 (35%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = -2
Query: 496 HVVFGNVVEGMEVVKQIETF-GSQSGKTSKRIVIKDCGQI 380
HVVFG+V++G E+V+QIE+ ++ + + + + +CG++
Sbjct: 3 HVVFGHVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 42
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -3
Query: 597 HTGPGVLSMANAGADTNGSQFFI 529
H G +SMAN G ++NGSQFFI
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFI 323
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2
Query: 727 YKGSIFHRVIPNFMLQGG 674
Y G+ FHRVIP FM+QGG
Sbjct: 60 YAGTQFHRVIPGFMVQGG 77
>SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 211 IYFHALLVCSLLHFCYYIFISTSSLAVCLDLNNSHYR-RPLFISTTML 71
+ F A+++C +LH IF L VC++L +Y+ R +F+ +L
Sbjct: 137 VEFKAMIICLILHLLLLIF----ELLVCINLGGRNYQWRIMFMPLYVL 180
>SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 172 FCYYI-FISTSSLAVCLDLNNSHYRRPLFISTTMLQF 65
FC + F ++++ VC L N HYRR + S L F
Sbjct: 287 FCNIMTFANSAANPVCYTLLNDHYRREIIYSLRKLTF 323
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 455 DNFHAFNNIPK-DNMSAIQQEVLTVVMKNWEPLVSAPALAMERTPGPV 595
D H ++ K + MS + E+ T++ KN+E + +E+T P+
Sbjct: 2024 DTLHTDDSFEKCEAMSEAEMEIRTILYKNYEVTETEEVYIVEKTSPPI 2071
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,311,242
Number of Sequences: 59808
Number of extensions: 436467
Number of successful extensions: 956
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -